Pre_GI: BLASTP Hits

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Query: NC_007953:504939:521676 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 521676, End: 522437, Length: 762

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015497:2831148:283705128370512837797747Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeHpcH/HpaI aldolase1e-33143
NC_004547:1600900:161793016179301618712783Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase3e-22105
NC_015563:3266004:326774632677463268585840Delftia sp. Cs1-4 chromosome, complete genome4-hydroxy-2-oxovalerate aldolase8e-1994
NC_011894:7035285:704181070418107042589780Methylobacterium nodulans ORS 2060, complete genomeHpcH/HpaI aldolase8e-1994
NC_009921:3666898:369061736906173691381765Frankia sp. EAN1pec, complete genomeHpcH/HpaI aldolase1e-1790.5
NC_010468:613812:617108617108617878771Escherichia coli ATCC 8739, complete genome2-dehydro-3-deoxyglucarate aldolase7e-1787.8
NC_010002:4287439:430593743059374306818882Delftia acidovorans SPH-1, complete genome2-dehydro-3-deoxyglucarate aldolase7e-1787.8
NC_009801:3595001:360766436076643608434771Escherichia coli E24377A, complete genome2-dehydro-3-deoxyglucarate aldolase8e-1787.4
CU928160:3344746:335902933590293359799771Escherichia coli IAI1 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_016641:4151403:417369041736904174451762Paenibacillus terrae HPL-003 chromosome, complete genomeHpcH/HpaI aldolase8e-1787.4
NC_012967:3191319:320571632057163206486771Escherichia coli B str. REL606 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_012947:630757:634053634053634823771Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_012759:3143455:315795731579573158727771Escherichia coli BW2952 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_009800:3307123:332140733214073322177771Escherichia coli HS, complete genome2-dehydro-3-deoxyglucarate aldolase8e-1787.4
NC_010473:3354052:336855433685543369324771Escherichia coli str. K-12 substr. DH10B, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
AC_000091:3258377:327264232726423273412771Escherichia coli W3110 DNA, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_000913:3256307:327080932708093271579771Escherichia coli K12, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
CP002516:613462:614812614812615582771Escherichia coli KO11, complete genome2-dehydro-3-deoxyglucarate aldolase8e-1787.4
CP002185:3475991:349049134904913491261771Escherichia coli W, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_002695:3994970:401202240120224012792771Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-1787.4
NC_016902:613462:614812614812615582771Escherichia coli KO11FL chromosome, complete genome2-dehydro-3-deoxyglucarate aldolase8e-1787.4
NC_013941:3884725:390166439016643902434771Escherichia coli O55:H7 str. CB9615 chromosome, complete genome2-dehydro-3-deoxyglucarate aldolase8e-1787.4
NC_011741:3344746:335902933590293359799771Escherichia coli IAI1 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_011415:3523364:354059135405913541361771Escherichia coli SE11 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_007613:2981829:299541529954152996185771Shigella boydii Sb227, complete genomehypothetical protein8e-1787.4
NC_011748:3608917:362775536277553628525771Escherichia coli 55989, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_011751:3710786:372772737277273728497771Escherichia coli UMN026 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_011750:3768692:378563137856313786401771Escherichia coli IAI39 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_010498:3488513:350262335026233503393771Escherichia coli SMS-3-5, complete genome2-dehydro-3-deoxyglucarate aldolase8e-1787.4
CU928145:3608917:362775536277553628525771Escherichia coli 55989 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase8e-1787.4
NC_007955:1664998:167532216753221676089768Methanococcoides burtonii DSM 6242, complete genome2-dehydro-3-deoxyglucarate aldolase1e-1686.7
NC_008786:1298817:132224413222441323041798Verminephrobacter eiseniae EF01-2, complete genome2-dehydro-3-deoxyglucarate aldolase4e-1685.1
NC_004741:3240909:325539932553993256169771Shigella flexneri 2a str. 2457T, complete genome4e-1685.1
NC_008698:1556223:157032515703251571086762Thermofilum pendens Hrk 5, complete genome2-dehydro-3-deoxyglucarate aldolase5e-1684.7
NC_015581:1043394:106438310643831065147765Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeHpcH/HpaI aldolase2e-1582.8
NC_003911:3864852:389505038950503895820771Silicibacter pomeroyi DSS-3, complete genomeHpcH/HpaI aldolase family protein4e-1582
NC_020304:2677372:271256027125602713348789Desulfocapsa sulfexigens DSM 10523, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase1e-1480.1
NC_010803:2067539:208701520870152087779765Chlorobium limicola DSM 245, complete genomeHpcH/HpaI aldolase2e-1376.3
NC_011892:352652:374207374207374974768Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase3e-1375.9
NC_007908:1328832:133667113366711337450780Rhodoferax ferrireducens T118, complete genome2-dehydro-3-deoxyglucarate aldolase2e-1272.8
NC_009050:427000:450373450373451173801Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceHpcH/HpaI aldolase4e-1271.6
NC_007494:739403:767008767008767808801Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceputative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase4e-1168.6
NC_018644:602200:615587615587616408822Alpha proteobacterium HIMB59 chromosome, complete genomeHpaI aldolase/citrate lyase family protein1e-1067
NC_009952:1680682:171106417110641711846783Dinoroseobacter shibae DFL 12, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase1e-1067
NC_014718:102852:103772103772104575804Burkholderia rhizoxinica HKI 454 chromosome, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase2e-1066.2
NC_013526:316075:323720323720324538819Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome2-dehydro-3-deoxyglucarate aldolase2e-1066.2
NC_018645:2492779:250729925072992508051753Desulfobacula toluolica Tol2, complete genome2-dehydro-3-deoxyglucarate aldolase3e-1065.9
NC_009256:3540531:354263035426303543415786Burkholderia vietnamiensis G4 chromosome 1, complete sequence2-dehydro-3-deoxyglucarate aldolase3e-1065.5
NC_010645:1341475:135519913551991356017819Bordetella avium 197N, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase5e-1064.7
NC_008726:6393489:642495564249556425761807Mycobacterium vanbaalenii PYR-1, complete genomeHpcH/HpaI aldolase2e-0963.2
NC_016048:3667890:367537436753743676144771Oscillibacter valericigenes Sjm18-20, complete genomealdolase2e-0963.2
NC_008258:3224721:323921132392113239756546Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-0962.8
NC_008596:3404832:342253234225323423314783Mycobacterium smegmatis str. MC2 155, complete genomeputative hydroxyacid aldolase2e-0859.3
NC_015563:313283:334116334116334925810Delftia sp. Cs1-4 chromosome, complete genome4-hydroxy-2-oxovalerate aldolase1e-0757.4
NC_015556:1188500:119306511930651193865801Pseudomonas fulva 12-X chromosome, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase1e-0757
NC_010625:1465603:147072314707231471520798Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceHpcH/HpaI aldolase7e-0754.3