Pre_GI: BLASTP Hits

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Query: NC_007953:1434705:1450076 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 1450076, End: 1450396, Length: 321

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010676:3009980:304045830404583040778321Burkholderia phytofirmans PsJN chromosome 2, complete sequenceprotein of unknown function DUF12553e-53206
NC_008391:865340:868053868053868373321Burkholderia cepacia AMMD chromosome 2, complete sequenceprotein of unknown function DUF12552e-49194
NC_007298:3271071:327300832730083273319312Dechloromonas aromatica RCB, complete genomeProtein of unknown function DUF12551e-32137
NC_008702:2378890:239169723916972392020324Azoarcus sp. BH72, complete genomeconserved hypothetical protein1e-29128
NC_006361:1720031:172327517232751723586312Nocardia farcinica IFM 10152, complete genomehypothetical protein3e-29127
NC_015422:3513689:355832135583213558638318Alicycliphilus denitrificans K601 chromosome, complete genomehypothetical protein7e-29125
NC_007498:1562270:156510415651041565418315Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein3e-27120
NC_013173:815696:839002839002839316315Desulfomicrobium baculatum DSM 4028, complete genomeprotein of unknown function DUF12552e-27120
NC_011146:3537546:355831135583113558622312Geobacter bemidjiensis Bem, complete genomeprotein of unknown function DUF12555e-27119
NC_009850:1011293:101258710125871012901315Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein (DUF1255 domain protein)2e-26117
NC_009663:2478311:249166024916602491971312Sulfurovum sp. NBC37-1, complete genomehypothetical protein4e-26116
NC_010814:2074266:207426620742662074580315Geobacter lovleyi SZ, complete genomeprotein of unknown function DUF12556e-26115
NC_017187:691769:711614711614711928315Arcobacter butzleri ED-1, complete genomehypothetical protein1e-1891.7
NC_004460:1313468:131799913179991318280282Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein4e-1476.6
NC_015740:1845370:185435218543521854633282Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-1373.9
NC_009656:3869281:388882738888273889108282Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein4e-1373.6
NC_008260:2961291:297258129725812972865285Alcanivorax borkumensis SK2, complete genomehypothetical protein5e-1269.7
NC_004741:310382:336554336554336838285Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-1167.8
NC_004337:309833:337420337420337704285Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-1167.8
NC_017328:335160:355284355284355568285Shigella flexneri 2002017 chromosome, complete genomeprotein yaiE2e-1167.8
NC_017168:2158839:218226621822662182553288Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-1167.4
NC_004088:1075454:109888110988811099168288Yersinia pestis KIM, complete genomehypothetical protein3e-1167.4
NC_008149:1002453:102588010258801026167288Yersinia pestis Nepal516, complete genomehypothetical protein3e-1167.4
NC_018531:2085939:210157321015732101884312Arthrobacter sp. Rue61a chromosome, complete genomehypothetical protein3e-0753.9