Pre_GI: BLASTN Hits

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Query: NC_007952:3238241 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3238241, End: 3256791, Length: 18551

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015186:2197236*2197236229649299257Acidiphilium multivorum AIU301, complete genome5e-32147BLASTN svgBLASTP svg
NC_004463:55409245540924556841727494Bradyrhizobium japonicum USDA 110, complete genome3e-21111BLASTN svgBLASTP svg
NC_004463:18725371872537189486322327Bradyrhizobium japonicum USDA 110, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_010086:18163781816378188976873391Burkholderia multivorans ATCC 17616 chromosome 2, complete03340BLASTN svgBLASTP svg
NC_010805:57570957570964147565767Burkholderia multivorans ATCC 17616 chromosome 2, complete03340BLASTN svgBLASTP svg
NC_010087:376918*37691844748870571Burkholderia multivorans ATCC 17616 chromosome 3, complete04209BLASTN svgBLASTP svg
NC_010801:48160148160150140619806Burkholderia multivorans ATCC 17616 chromosome 3, complete03772BLASTN svgBLASTP svg
NC_007951:76950076950079672027221Burkholderia xenovorans LB400 chromosome 1, complete sequence05079BLASTN svgBLASTP svg
NC_007951:2206263*2206263222784621584Burkholderia xenovorans LB400 chromosome 1, complete sequence05077BLASTN svgBLASTP svg
NC_007951:20873852087385211670629322Burkholderia xenovorans LB400 chromosome 1, complete sequence05077BLASTN svgBLASTP svg
NC_007951:19289061928906195286323958Burkholderia xenovorans LB400 chromosome 1, complete sequence04684BLASTN svgBLASTP svg
NC_007951:47416204741620476397822359Burkholderia xenovorans LB400 chromosome 1, complete sequence4e-1487.7BLASTN svgBLASTP svg
NC_007951:19715841971584198959918016Burkholderia xenovorans LB400 chromosome 1, complete sequence4e-1487.7BLASTN svgBLASTP svg
NC_007951:29046442904644294513440491Burkholderia xenovorans LB400 chromosome 1, complete sequence9e-1279.8BLASTN svgBLASTP svg
NC_002678:48591114859111488349624386Mesorhizobium loti MAFF303099, complete genome6e-19103BLASTN svgBLASTP svg
NC_008314:15591021559102157947720376Ralstonia eutropha H16 chromosome 2, complete sequence1e-29139BLASTN svgBLASTP svg
NC_003047:33600003360000341859958600Sinorhizobium meliloti 1021, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_011662:23201002320100236647446375Thauera sp. MZ1T, complete genome7e-25123BLASTN svgBLASTP svg
NC_011662:114205242052Thauera sp. MZ1T, complete genome6e-19103BLASTN svgBLASTP svg