Pre_GI: BLASTP Hits

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Query: NC_007952:3238241:3240757 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 3240757, End: 3242151, Length: 1395

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009483:2640403:2640403264040326430782676Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase7e-1789
NC_009483:3173464:3183932318393231867212790Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase2e-1687.8
NC_019977:302454:3024543024543055283075Methanomethylovorans hollandica DSM 15978, complete genomePAS domain S-box1e-1378.6
NC_009483:1779601:1802418180241818049162499Geobacter uraniireducens Rf4 chromosome, complete genomemulti-sensor signal transduction histidine kinase4e-1376.3
NC_013890:808791:8152388152388190263789Dehalococcoides sp. GT chromosome, complete genomePAS/PAC sensor hybrid histidine kinase6e-1375.9
NC_007759:1169547:1181277118127711840962820Syntrophus aciditrophicus SB, complete genomesensory domain linked to a LuxR family regulatory protein3e-1273.6
NC_010159:1710268:1712903171290317149842082Yersinia pestis Angola, complete genomeputative sensory box-containing diguanylate cyclase5e-1272.8
NC_012796:4075583:4148352414835241509132562Desulfovibrio magneticus RS-1, complete genomeputative signaling protein7e-1272.4
NC_015726:2817352:2821000282100028239002901Cupriavidus necator N-1 chromosome 1, complete sequencediguanylate cyclase YegE7e-1272.4
NC_009925:5957806:5957806595780659602412436Acaryochloris marina MBIC11017, complete genomePAS/PAC sensor signal transduction histidine kinase1e-1171.6
NC_014355:3248386:3248386324838632515623177Candidatus Nitrospira defluvii, complete genomeputative histidine kinase1e-1171.6
NC_015172:1161000:1174036117403611766122577Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomediguanylate cyclase and metal dependent phosphohydrolase2e-1170.9
NC_019942:1211535:1231788123178812348473060Aciduliprofundum sp. MAR08-339, complete genomePAS domain S-box2e-1170.9
NC_008149:2652825:2656187265618726575421356Yersinia pestis Nepal516, complete genomehypothetical protein4e-1169.7
NC_013526:316075:3363983363983404894092Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomePAS/PAC sensor hybrid histidine kinase5e-1169.3
NC_012796:3267569:3296206329620632988872682Desulfovibrio magneticus RS-1, complete genomeputative signaling protein7e-1168.9
NC_012483:483425:4969904969904998002811Acidobacterium capsulatum ATCC 51196, complete genomesensory box sensor histidine kinase2e-1067.8
NC_012660:4734363:4750327475032747527892463Pseudomonas fluorescens SBW25 chromosome, complete genomeputative signaling-related membrane protein3e-1067
NC_012779:996879:1017343101734310203753033Edwardsiella ictaluri 93-146, complete genomePAS fold family3e-1067
NC_008800:1942000:1961046196104619631212076Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-1066.6
NC_017192:497950:5007825007825039193138Arcobacter sp. L, complete genomehypothetical protein4e-1066.6
NC_016112:57641:6315563155653142160Methylomicrobium alcaliphilum chromosome, complete genomePAS fold family5e-1066.2
NC_011770:4542183:4565798456579845691603363Pseudomonas aeruginosa LESB58, complete genomehypothetical protein6e-1065.9
NC_008463:4342119:4365841436584143692033363Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein6e-1065.9
NC_015161:36668:4282342823461953373Deinococcus proteolyticus MRP chromosome, complete genome7e-1065.5
NC_007759:2179000:2202058220205822042082151Syntrophus aciditrophicus SB, complete genomesensory domain linked to a LuxR regulatory protein3e-0963.5
NC_008340:1303607:1305923130592313074071485Alkalilimnicola ehrlichei MLHE-1, complete genomediguanylate cyclase with PAS/PAC sensor4e-0963.2
NC_012881:4097552:4103347410334741057222376Desulfovibrio salexigens DSM 2638, complete genomePAS/PAC sensor hybrid histidine kinase5e-0962.8
NC_016048:3667890:3685717368571736882842568Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein9e-0962
NC_007796:1376910:1376910137691013787691860Methanospirillum hungatei JF-1, complete genomemulti-sensor signal transduction histidine kinase1e-0861.6
NC_007604:1383192:1391347139134713967705424Synechococcus elongatus PCC 7942, complete genomemulti-sensor signal transduction histidine kinase1e-0861.2
NC_006576:217697:2259562259562294533498Synechococcus elongatus PCC 6301, complete genomephytochrome2e-0861.2
NC_014376:2964731:2978427297842729811832757Clostridium saccharolyticum WM1 chromosome, complete genomediguanylate cyclase and metal dependent phosphohydrolase2e-0860.8
NC_018012:2327376:2349560234956023535133954Thiocystis violascens DSM 198 chromosome, complete genomePAS domain-containing protein2e-0860.5
NC_014972:2503107:2515974251597425183792406Desulfobulbus propionicus DSM 2032 chromosome, complete genomePAS modulated Fis family sigma-54 specific transcriptional regulator3e-0860.1
NC_008752:2615360:2636818263681826414254608Acidovorax avenae subsp. citrulli AAC00-1, complete genomesignal transduction histidine kinase with CheB and CheR activity4e-0859.7
NC_012796:985000:9923319923319961283798Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator7e-0859.3
NC_015968:3023048:3023048302304830263773330Enterobacter asburiae LF7a chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase8e-0858.9
NC_014121:3453815:3453815345381534571683354Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative sensor protein8e-0858.9
NC_007759:512477:5191205191205210481929Syntrophus aciditrophicus SB, complete genometranscriptional regulator GerE family8e-0858.9
NC_015138:3160764:3160764316076431653684605Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completesignal transduction histidine kinase with CheB and CheR activity1e-0758.5
NC_015703:3637312:3650928365092836539513024Runella slithyformis DSM 19594 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase1e-0758.2
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase1e-0758.2
NC_012108:1973861:1982537198253719841711635Desulfobacterium autotrophicum HRM2, complete genomesensory box histidine kinase2e-0757.8
NC_012912:4071859:4095105409510540966971593Dickeya zeae Ech1591, complete genomemethyl-accepting chemotaxis sensory transducer2e-0757.8
NC_017249:7917586:7930165793016579321591995Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator2e-0757.8
NC_004463:2344128:2350024235002423519281905Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator2e-0757.8
NC_007645:3712272:3726842372684237291782337Hahella chejuensis KCTC 2396, complete genomeSignal transduction histidine kinase2e-0757.4
NC_014972:2771902:2776933277693327799383006Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase4e-0756.6
NC_012483:483425:5242655242655266102346Acidobacterium capsulatum ATCC 51196, complete genomesigma-54 dependent transcriptional regulator, Fis family4e-0756.6
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein4e-0756.6
NC_015574:1474967:1492207149220714946212415Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase3e-0756.6
NC_007484:3035068:3037810303781030396001791Nitrosococcus oceani ATCC 19707, complete genomePAS sensor diguanylate cyclase/phophodiesterase4e-0756.2
NC_014623:5350116:5368481536848153706552175Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein7e-0755.8
NC_015320:160792:1633571633571662782922Archaeoglobus veneficus SNP6 chromosome, complete genomePAS sensor protein7e-0755.8
NC_011832:2668337:2683714268371426862482535Candidatus Methanosphaerula palustris E1-9c, complete genomePAS/PAC sensor signal transduction histidine kinase7e-0755.8
NC_008148:2498000:2526117252611725280391923Rubrobacter xylanophilus DSM 9941, complete genomemulti-sensor signal transduction histidine kinase8e-0755.5
NC_018645:4879931:4900050490005049038533804Desulfobacula toluolica Tol2, complete genometwo component system sensor histidine kinase, hybrid1e-0655.1
NC_007645:5160133:5160133516013351626792547Hahella chejuensis KCTC 2396, complete genomepredicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain1e-0655.1
NC_009253:389835:4114594114594136992241Desulfotomaculum reducens MI-1 chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase1e-0654.7
NC_015675:4493758:4506118450611845079111794Mesorhizobium opportunistum WSM2075 chromosome, complete genomesignal transduction histidine kinase1e-0654.7
NC_007760:4055860:4055860405586040591263267Anaeromyxobacter dehalogenans 2CP-C, complete genomePAS/PAC sensor hybrid histidine kinase2e-0654.3
NC_017249:4365935:4380207438020743825702364Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0654.3
NC_020389:1730376:1730376173037617326882313Methanosarcina mazei Tuc01, complete genomesensory transduction histidine kinase2e-0654.3
NC_014972:1923035:1941238194123819435022265Desulfobulbus propionicus DSM 2032 chromosome, complete genomeputative PAS/PAC sensor protein2e-0653.9
NC_003552:1492500:1513317151331715176874371Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase3e-0653.5
NC_015672:699904:6999046999047023272424Flexistipes sinusarabici DSM 4947 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase3e-0653.5
NC_013959:826868:8672508672508700332784Sideroxydans lithotrophicus ES-1 chromosome, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)3e-0653.5
NC_009523:4222696:4226748422674842286971950Roseiflexus sp. RS-1 chromosome, complete genomeputative PAS/PAC sensor protein3e-0653.5
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit5e-0653.1
NC_012721:770651:8281608281608297221563Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, LuxR family protein4e-0653.1
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein4e-0653.1
NC_009925:330470:3678103678103699902181Acaryochloris marina MBIC11017, complete genomesensory transduction histidine kinase4e-0653.1
NC_011757:39881:4793747937503692433Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase4e-0653.1
NC_012796:4693500:4714436471443647185634128Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator7e-0652.4
NC_016616:134449:1580331580331600692037Dechlorosoma suillum PS chromosome, complete genomePAS domain S-box8e-0652
NC_007796:2966386:2966386296638629685692184Methanospirillum hungatei JF-1, complete genomePAS/PAC sensor signal transduction histidine kinase9e-0652
NC_014253:431942:4453354453354474642130Methanohalobium evestigatum Z-7303 chromosome, complete genomesignal transduction histidine kinase9e-0652
NC_012796:4693500:4693542469354246964812940Desulfovibrio magneticus RS-1, complete genomesensor histidine kinase9e-0652