Pre_GI: BLASTP Hits

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Query: NC_007952:1453000:1478945 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1478945, End: 1479862, Length: 918

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013422:1732677:173793617379361738862927Halothiobacillus neapolitanus c2, complete genomeurea ABC transporter, permease protein UrtB3e-99362
NC_008343:2050000:206574320657432066669927Granulibacter bethesdensis CGDNIH1, complete genomeamide-urea transport system permease protein8e-81300
NC_013209:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-01, complete genomeamide-urea transporter permease protein8e-76283
NC_017100:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-03, complete genomeamide-urea transporter permease protein8e-76283
NC_017108:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-12, complete genomeamide-urea transporter permease protein8e-76283
NC_017111:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-32, complete genomeamide-urea transporter permease protein8e-76283
NC_017121:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-07, complete genomeamide-urea transporter permease protein8e-76283
NC_017125:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-22, complete genomeamide-urea transporter permease protein8e-76283
NC_017146:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-26, complete genomeamide-urea transporter permease protein8e-76283
NC_017150:160892:177858177858178784927Acetobacter pasteurianus IFO 3283-01-42C, complete genomeamide-urea transporter permease protein8e-76283
NC_015681:1201926:121237712123771213279903Thermodesulfatator indicus DSM 15286 chromosome, complete genomeurea ABC transporter permease UrtB8e-66250
NC_004369:1051013:106199710619971062881885Corynebacterium efficiens YS-314, complete genomeputative ABC transporter permease protein9e-52204
NC_009437:2579161:262073926207392621650912Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeinner-membrane translocator5e-45181
NC_008781:1038158:1050993105099310525671575Polaromonas naphthalenivorans CJ2, complete genomeinner-membrane translocator2e-44179
NC_016825:158626:1647071647071662811575Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12urea ABC transporter permease UrtB2e-44179
NC_015224:1641819:1661643166164316631901548Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,branched chain amino acid ABC transporter permease4e-43175
NC_009074:2970435:3009836300983630114581623Burkholderia pseudomallei 668 chromosome I, complete sequenceputative amino acid ABC transporter, permease protein4e-43175
NC_008800:3123495:3123495312349531250961602Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,branched chain amino acid ABC transporter permease5e-43175
NC_009778:1717458:1715896171589617174611566Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein9e-43174
NC_017506:2993679:3015708301570830173061599Marinobacter adhaerens HP15 chromosome, complete genomeurea ABC transporter permease UrtB2e-42173
NC_018691:761560:7750947750947766111518Alcanivorax dieselolei B5 chromosome, complete genomeBranched-chain amino acid ABC transporter, permease protein6e-40164
NC_006361:5546232:555635655563565557240885Nocardia farcinica IFM 10152, complete genomeputative branched-chain amino acid transporter2e-39162
NC_012997:4621764:4638890463889046405811692Teredinibacter turnerae T7901, complete genomeurea ABC transporter, permease protein UrtB3e-39162
NC_004113:1137754:1152921115292111540781158Thermosynechococcus elongatus BP-1, complete genomeABC transporter permease protein2e-32139
NC_003911:1791878:1825767182576718277221956Silicibacter pomeroyi DSS-3, complete genomebranched-chain amino acid ABC transporter, permease protein2e-31136
NC_012988:1817000:182309118230911823975885Methylobacterium extorquens DM4, complete genomeABC transporter1e-30133
NC_011757:1553500:155955015595501560434885Methylobacterium chloromethanicum CM4, complete genomeinner-membrane translocator1e-30133
NC_020908:5047410:505246350524635053332870Octadecabacter arcticus 238, complete genomeputative high-affinity branched-chain amino acid transport system permease protein1e-29130
NC_007516:2420264:2430867243086724320271161Synechococcus sp. CC9605, complete genomeputative urea ABC transporter3e-28125
NC_013894:672840:686165686165687049885Thermocrinis albus DSM 14484 chromosome, complete genomeinner-membrane translocator5e-27122
NC_010515:1205258:122021112202111221086876Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceinner-membrane translocator1e-24114
NC_014828:2497462:251340325134032514260858Ethanoligenens harbinense YUAN-3 chromosome, complete genomeinner-membrane translocator2e-23109
NC_011001:302500:313884313884314672789Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative amino acid transporter2e-23109
NC_008212:2978786:299322129932212994147927Haloquadratum walsbyi DSM 16790, complete genomeABC-type urea transport system, permease protein I1e-22107
NC_015556:4025559:403508140350814035950870Pseudomonas fulva 12-X chromosome, complete genomeinner-membrane translocator1e-22107
NC_010505:4676403:470123147012314702064834Methylobacterium radiotolerans JCM 2831, complete genomeinner-membrane translocator4e-22105
NC_020453:3179346:318067731806773181549873Agromonas oligotrophica S58 DNA, complete genomeputative branched-chain amino acid ABC transporter permease protein9e-1994.4
NC_007953:504939:514928514928515788861Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit9e-1994.4
NC_016147:3023180:304308030430803043940861Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative ABC-transporter4e-1892.4
NC_020210:2044944:205128420512842052150867Geobacillus sp. GHH01, complete genomeputative leucine ABC transporter ATP-binding protein1e-1687
NC_012880:913698:915489915489916358870Dickeya dadantii Ech703, complete genomeinner-membrane translocator3e-1685.9
NC_010170:4739925:474503347450334745905873Bordetella petrii, complete genomeputative branched-chain amino acid transport permease1e-1584.3
NC_015684:1343251:136214213621421362996855Oligotropha carboxidovorans OM5 chromosome, complete genomeABC transporter permease1e-1584
NC_009720:464078:466677466677467558882Xanthobacter autotrophicus Py2, complete genomeinner-membrane translocator1e-1584
NC_010511:637214:652764652764653654891Methylobacterium sp. 4-46 chromosome, complete genomeinner-membrane translocator5e-1582
NC_016585:1004000:102056910205691021501933Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencebranched-chain amino acid ABC transporter permease8e-1581.3
NC_017506:1100679:112535911253591126222864Marinobacter adhaerens HP15 chromosome, complete genomeinner-membrane translocator2e-1480.1
NC_010676:2720068:272545727254572726353897Burkholderia phytofirmans PsJN chromosome 2, complete sequenceinner-membrane translocator3e-1479.3
NC_014974:1076565:109330510933051094168864Thermus scotoductus SA-01 chromosome, complete genomeinner-membrane translocator1e-1377.4
NC_012988:4292815:431816243181624319046885Methylobacterium extorquens DM4, complete genomeBranched-chain amino acid ABC transporter permease1e-1377
NC_009434:3434381:345878434587843459671888Pseudomonas stutzeri A1501, complete genomebranched-chain amino acid ABC transporter, permease protein1e-1273.9
NC_003454:2080705:209941620994162100342927Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeBranched-chain amino acid transport system permease protein livH1e-1273.9
NC_008786:1507139:152574115257411526613873Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator9e-1167.8
NC_009445:467682:500622500622501605984Bradyrhizobium sp. ORS 278 chromosome, complete genomebranched-chain amino acid ABC transporter permease3e-1066.2
NC_011001:2517159:251921225192122520171960Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative amino acid ABC transporter permease3e-1066.2
NC_008543:2035292:203657520365752037534960Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceinner-membrane translocator4e-1065.9
NC_008061:428501:442132442132443091960Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceinner-membrane translocator4e-1065.9
NC_007511:719493:732428732428733387960Burkholderia sp. 383 chromosome 2, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit3e-1065.9
NC_015458:3077804:309696430969643097884921Pusillimonas sp. T7-7 chromosome, complete genomeinner-membrane translocator4e-1065.5
NC_019964:2080444:2099693209969321007931101Halovivax ruber XH-70, complete genomebranched-chain amino acid ABC-type transport system, permease component4e-1065.5
NC_010515:2358134:237333523733352374261927Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceinner-membrane translocator5e-1065.5
NC_010552:2089140:209189420918942092820927Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceinner-membrane translocator6e-1065.1
NC_017192:1063955:106518710651871066059873Arcobacter sp. L, complete genomebranched-chain amino acid ABC transporter permease component2e-0963.5
NC_008752:3217695:322249332224933223446954Acidovorax avenae subsp. citrulli AAC00-1, complete genomeinner-membrane translocator4e-0962.4
NC_010170:1219641:122598412259841226847864Bordetella petrii, complete genomeputative branched-chain amino acid transport permease5e-0962
NC_020291:6426704:644397764439776444852876Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeamino acid/amide ABC transporter membrane protein 1, HAAT family5e-0962
NC_014153:1663597:167626816762681677137870Thiomonas intermedia K12 chromosome, complete genomeinner-membrane translocator6e-0961.6
NC_013939:913890:929718929718930581864Deferribacter desulfuricans SSM1, complete genomebranched-chain amino acid ABC transporter permease1e-0860.8
NC_007645:1245927:126485312648531265779927Hahella chejuensis KCTC 2396, complete genomeBranched-chain amino acid ABC-type transport system, permease components1e-0860.8
NC_008702:4064470:408740240874024088334933Azoarcus sp. BH72, complete genomeABC transporter permease protein1e-0860.5
NC_011004:4073916:4113713411371341147201008Rhodopseudomonas palustris TIE-1, complete genomeinner-membrane translocator1e-0860.5
NC_009092:3057319:307552630755263076419894Shewanella loihica PV-4, complete genomeinner-membrane translocator4e-0858.9
NC_014830:3438504:347840034784003479263864Intrasporangium calvum DSM 43043 chromosome, complete genomeinner-membrane translocator6e-0858.5
NC_015563:2656628:265662826566282657548921Delftia sp. Cs1-4 chromosome, complete genomeABC transporter integral membrane protein8e-0858.2
NC_017059:469108:490260490260491210951Rhodospirillum photometricum DSM 122, complete genomeInner-membrane translocator9e-0857.8
NC_003047:3202125:321880132188013219688888Sinorhizobium meliloti 1021, complete genomePUTATIVE PERMEASE ABC TRANSPORTER PROTEIN3e-0756.2
NC_017249:908500:9434959434959445051011Bradyrhizobium japonicum USDA 6, complete genomeABC transporter permease3e-0756.2
NC_009073:803372:807810807810808685876Pyrobaculum calidifontis JCM 11548, complete genomeinner-membrane translocator4e-0755.8
NC_010557:679656:691986691986692936951Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceinner-membrane translocator6e-0755.1
NC_012108:3824977:383016438301643831096933Desulfobacterium autotrophicum HRM2, complete genomeABC-type branched-chain amino acid transport system, permease component6e-0755.1
NC_011060:1898224:193192919319291932798870Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator9e-0754.7
NC_007908:1108494:115297111529711153855885Rhodoferax ferrireducens T118, complete genomeinner-membrane translocator8e-0754.7
NC_007643:3799425:380498138049813805868888Rhodospirillum rubrum ATCC 11170, complete genomeinner-membrane translocator1e-0654.3
NC_021066:1393750:141023314102331411147915Raoultella ornithinolytica B6, complete genomehigh-affinity branched-chain amino acid ABC transporter membrane protein2e-0653.5
NC_015948:2421933:242105324210532421940888Haloarcula hispanica ATCC 33960 chromosome chromosome I, completebranched-chain amino acid ABC transporter permease2e-0653.5
NC_007604:2555000:257574625757462576687942Synechococcus elongatus PCC 7942, complete genomeintegral membrane protein of the ABC-type Nat permease for neutral amino acids NatD3e-0653.1
NC_015318:1583839:159048715904871591350864Hippea maritima DSM 10411 chromosome, complete genomeABC transporter integral membrane subunit2e-0653.1
NC_010676:2658495:267762626776262678576951Burkholderia phytofirmans PsJN chromosome 2, complete sequenceinner-membrane translocator2e-0653.1
NC_008751:2774000:279395427939542794862909Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeinner-membrane translocator2e-0653.1
NC_002937:614000:618218618218619126909Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehigh-affinity branched-chain amino acid ABC transporter, permease protein2e-0653.1
NC_008701:1363665:138884613888461389721876Pyrobaculum islandicum DSM 4184, complete genomeinner-membrane translocator3e-0652.8
NC_008687:229941:236773236773237651879Paracoccus denitrificans PD1222 chromosome 2, complete sequenceinner-membrane translocator4e-0652.4
NC_008786:4216152:423528442352844236147864Verminephrobacter eiseniae EF01-2, complete genomeinner-membrane translocator4e-0652.4
NC_015556:819503:832389832389833303915Pseudomonas fulva 12-X chromosome, complete genomeinner-membrane translocator7e-0651.6
NC_007953:572926:581940581940582812873Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, inner membrane subunit7e-0651.6
NC_014532:110875:1343101343101353171008Halomonas elongata DSM 2581, complete genomeABC-type transport system permease protein7e-0651.6
NC_011060:2099255:210740221074022108286885Pelodictyon phaeoclathratiforme BU-1, complete genomeinner-membrane translocator6e-0651.6
NC_016633:1898234:189823418982341899109876Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebranched-chain amino acid ABC-type transport system, permease component9e-0651.2