Pre_GI: BLASTP Hits

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Query: NC_007952:1453000:1477605 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1477605, End: 1478870, Length: 1266

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008343:2050000:2066710206671020679931284Granulibacter bethesdensis CGDNIH1, complete genomeamide-urea binding protein9e-176616
NC_010995:1101614:1123276112327611244721197Cellvibrio japonicus Ueda107, complete genomeamide-urea binding protein5e-172604
NC_013209:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-01, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017100:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-03, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017108:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-12, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017111:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-32, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017121:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-07, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017125:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-22, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017146:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-26, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_017150:160892:1764661764661778031338Acetobacter pasteurianus IFO 3283-01-42C, complete genomeamide-urea transporter substrate-binding periplasmic protein3e-169594
NC_013422:1732677:1738955173895517401991245Halothiobacillus neapolitanus c2, complete genomeurea ABC transporter, urea binding protein6e-149527
NC_009437:2579161:2621677262167726229241248Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular ligand-binding receptor1e-99363
NC_015681:1201926:1211035121103512123031269Thermodesulfatator indicus DSM 15286 chromosome, complete genomeurea ABC transporter, urea binding protein1e-95350
NC_004113:1137754:1151497115149711528101314Thermosynechococcus elongatus BP-1, complete genomeABC transporter substrate-binding protein1e-91337
NC_006361:5546232:5555078555507855563521275Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-85316
NC_004369:1051013:1060725106072510619781254Corynebacterium efficiens YS-314, complete genomeputative ABC transporter substrate-binding protein2e-84313
NC_013894:672840:6870666870666882801215Thermocrinis albus DSM 14484 chromosome, complete genomeurea ABC transporter, urea binding protein2e-83309
NC_010475:420978:4209784209784222941317Synechococcus sp. PCC 7002, complete genomeABC transporter, branched-chain amino acid transport, periplasmic binding protein4e-83308
NC_005070:334952:3673363673363686161281Synechococcus sp. WH 8102, complete genomeputative urea binding protein5e-83308
NC_007516:2420264:2432101243210124333991299Synechococcus sp. CC9605, complete genomeputative urea ABC transporter, substrate binding protein1e-80300
NC_010084:2674972:2696485269648526977921308Burkholderia multivorans ATCC 17616 chromosome 1, completeurea ABC transporter urea binding protein4e-71268
NC_008781:1038158:1049613104961310508961284Polaromonas naphthalenivorans CJ2, complete genometwin-arginine translocation pathway signal4e-70265
NC_015224:1641819:1660245166024516615131269Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative substrate-binding periplasmic transport protein7e-69261
NC_008800:3123495:3125172312517231264401269Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative substrate-binding periplasmic transport protein1e-68260
NC_009074:2970435:3008433300843330097401308Burkholderia pseudomallei 668 chromosome I, complete sequenceputative amino acid ABC transporter, periplasmic amino acid-binding protein2e-68259
NC_016825:158626:1663751663751675411167Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12twin-arginine translocation pathway signal8e-68258
NC_003911:1791878:1827788182778818291221335Silicibacter pomeroyi DSS-3, complete genomebranched-chain amino acid ABC transporter, periplasmic substrate-binding protein8e-66251
NC_020908:5047410:5051128505112850523781251Octadecabacter arcticus 238, complete genomeputative aliphatic amidase expression-regulating protein3e-65249
NC_014828:2497462:2514413251441325156571245Ethanoligenens harbinense YUAN-3 chromosome, complete genomeABC transporter, periplasmic solute-binding protein, putative7e-65248
NC_017506:2993679:3017402301740230186911290Marinobacter adhaerens HP15 chromosome, complete genomeurea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein1e-63243
NC_014828:2497462:2506564250656425077631200Ethanoligenens harbinense YUAN-3 chromosome, complete genomeExtracellular ligand-binding receptor7e-61234
NC_012997:4621764:4640752464075246420501299Teredinibacter turnerae T7901, complete genomeurea ABC transporter, urea binding protein2e-60233
NC_011757:1553500:1560502156050215618121311Methylobacterium chloromethanicum CM4, complete genomeputative substrate-binding component of ABC transporter4e-60232
NC_012988:1817000:1824043182404318253291287Methylobacterium extorquens DM4, complete genomealiphatic amidase expression-regulating protein , amiC5e-60232
NC_018691:761560:7768057768057781031299Alcanivorax dieselolei B5 chromosome, complete genomeBranched-chain amino acid ABC transporter, putative6e-60231
NC_015563:3571682:3577189357718935783371149Delftia sp. Cs1-4 chromosome, complete genomeextracellular ligand-binding receptor5e-57222
NC_010002:3980832:3996174399617439973221149Delftia acidovorans SPH-1, complete genomeABC branched chain amino acid family transporter, periplasmic ligand binding protein1e-56220
NC_020908:5047410:5058198505819850593521155Octadecabacter arcticus 238, complete genomealiphatic amidase expression-regulating protein5e-56218
NC_010505:4676403:4696869469686946980231155Methylobacterium radiotolerans JCM 2831, complete genomeputative amidase expression-regulating protein3e-48192
NC_015138:4205986:4205986420598642071311146Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeextracellular ligand-binding receptor8e-48191
NC_012988:4292815:4327289432728943283681080Methylobacterium extorquens DM4, complete genomealiphatic amidase expression-regulating protein, AmiC2e-46187
NC_015556:4025559:4039913403991340410371125Pseudomonas fulva 12-X chromosome, complete genomeABC-type branched-chain amino acid transport systems periplasmic component-like protein3e-40166
NC_012880:913698:9164499164499176931245Dickeya dadantii Ech703, complete genomeExtracellular ligand-binding receptor9e-39161
NC_011770:1811874:1827106182710618282631158Pseudomonas aeruginosa LESB58, complete genomealiphatic amidase expression-regulating protein4e-37155
NC_015723:1448000:1454414145441414555351122Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein5e-37155
NC_010505:4676403:4699711469971147008651155Methylobacterium radiotolerans JCM 2831, complete genomeExtracellular ligand-binding receptor1e-36154
NC_008463:1756434:1770873177087317720301158Pseudomonas aeruginosa UCBPP-PA14, complete genomealiphatic amidase expression-regulating protein2e-36153
NC_015556:4025559:4033832403383240350701239Pseudomonas fulva 12-X chromosome, complete genomebranched chain amino-acid ABC transporter substrate-binding protein1e-35151
NC_012988:4292815:4316974431697443181311158Methylobacterium extorquens DM4, complete genomeextracellular ligand-binding receptor3e-35149
NC_020453:3179346:3179346317934631805841239Agromonas oligotrophica S58 DNA, complete genomealiphatic amidase expression-regulating protein1e-32141
NC_015312:6357469:6360162636016263612321071Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeregulatory protein3e-31136
NC_008212:2978786:2994180299418029954721293Haloquadratum walsbyi DSM 16790, complete genomeABC-type urea transport systems,substrate-binding protein2e-28127
NC_010515:1205258:1216482121648212176601179Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceABC branched chain amino acid family transporter, periplasmic ligand binding protein6e-2099
NC_011001:302500:3173093173093184871179Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein1e-1997.8
NC_014974:1076565:1094174109417410953641191Thermus scotoductus SA-01 chromosome, complete genomeextracellular ligand-binding receptor3e-1789.7
NC_016906:839406:8444918444918458761386Gordonia polyisoprenivorans VH2 chromosome, complete genomehypothetical protein1e-1687.8
NC_008576:3331825:3339175333917533425313357Magnetococcus sp. MC-1, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)2e-1687.4
NC_010170:4739925:4743625474362547448961272Bordetella petrii, complete genomeABC transporter substrate-binding protein2e-1480.9
NC_009720:464078:4676714676714690081338Xanthobacter autotrophicus Py2, complete genomeextracellular ligand-binding receptor7e-1479
NC_015387:2072237:2073114207311420742381125Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeExtracellular ligand-binding receptor2e-1274.3
NC_014540:1835493:1839220183922018404281209Burkholderia sp. CCGE1003 chromosome 2, complete sequenceextracellular ligand-binding receptor1e-1171.6
NC_011661:961129:9625519625519636811131Dictyoglomus turgidum DSM 6724, complete genomeExtracellular ligand-binding receptor2e-1170.5
NC_014391:4644500:4645341464534146466811341Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeextracellular ligand-binding receptor3e-1170.1
NC_010511:6067000:6110790611079061119801191Methylobacterium sp. 4-46 chromosome, complete genomebranched chain amino acid ABC transporter substrate-binding protein8e-1168.6
NC_009483:2489000:2489003248900324901421140Geobacter uraniireducens Rf4 chromosome, complete genomeextracellular ligand-binding receptor2e-1067.4
NC_011297:787932:7916897916897928191131Dictyoglomus thermophilum H-6-12, complete genomebranched chain amino acid ABC transporter2e-1067
NC_010511:6169468:6190516619051661917511236Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor7e-1065.5
NC_013740:15401:1741117411185891179Acidaminococcus fermentans DSM 20731, complete genomeExtracellular ligand-binding receptor8e-1065.5
NC_009617:3184924:3218440321844032196211182Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeextracellular ligand-binding receptor3e-0963.2
NC_012658:545840:5468995468995480411143Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative high-affinity branched-chain amino acid ABC transporter amino acid-binding protein4e-0963.2
NC_015318:1583839:1594624159462415957661143Hippea maritima DSM 10411 chromosome, complete genomeExtracellular ligand-binding receptor6e-0962.4
NC_011146:2200142:2235574223557422367671194Geobacter bemidjiensis Bem, complete genomeExtracellular ligand-binding receptor2e-0861.2
NC_008554:4839116:4848442484844248494611020Syntrophobacter fumaroxidans MPOB, complete genomeExtracellular ligand-binding receptor2e-0860.8
NC_016885:1153277:1177898117789811791841287Pyrobaculum oguniense TE7 chromosome, complete genomebranched-chain amino acid ABC transporter periplasmic protein4e-0859.7
NC_013895:1282566:1295398129539812965551158Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completereceptor family ligand-binding protein4e-0859.7
NC_007948:3502843:3516731351673135180021272Polaromonas sp. JS666, complete genomeTwin-arginine translocation pathway signal4e-0859.7
NC_015556:819503:8310258310258321461122Pseudomonas fulva 12-X chromosome, complete genomeExtracellular ligand-binding receptor4e-0859.7
NC_016585:1004000:1019348101934810205441197Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencebranched chain amino acid ABC transporter substrate-binding protein5e-0859.3
NC_011768:79297:9265092650938341185Desulfatibacillum alkenivorans AK-01, complete genomeExtracellular ligand-binding receptor8e-0858.5
NC_008786:1507139:1526660152666015278381179Verminephrobacter eiseniae EF01-2, complete genomeExtracellular ligand-binding receptor9e-0858.5
NC_011892:306437:3064373064373076721236Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeExtracellular ligand-binding receptor1e-0758.2
NC_021066:1393750:1411247141124714123621116Raoultella ornithinolytica B6, complete genomeextracellular ligand-binding receptor1e-0758.2
NC_020210:2044944:2053712205371220549561245Geobacillus sp. GHH01, complete genomeputative leucine ABC transporter substrate-binding protein2e-0757.4
NC_016633:1898234:1899184189918419003501167Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebranched-chain amino acid ABC transporter periplasmic protein2e-0757.4
NC_010170:1219641:1241603124160312428051203Bordetella petrii, complete genomeputative Substrate-binding periplasmic protein2e-0757
NC_014834:2264108:2301627230162723029791353Rhodopseudomonas palustris DX-1 chromosome, complete genomeextracellular ligand-binding receptor3e-0757
NC_010511:637214:6536716536716549121242Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor3e-0757
NC_011894:4013830:4036876403687640380931218Methylobacterium nodulans ORS 2060, complete genomeExtracellular ligand-binding receptor7e-0755.5
NC_010645:278906:2980692980692992951227Bordetella avium 197N, complete genomebranched-chain amino acid binding protein8e-0755.5
NC_008786:5128363:5138340513834051394941155Verminephrobacter eiseniae EF01-2, complete genomeExtracellular ligand-binding receptor8e-0755.5
NC_015458:1692401:1708418170841817097191302Pusillimonas sp. T7-7 chromosome, complete genomeextracellular ligand-binding receptor1e-0654.3
NC_016147:3023180:3043998304399830451161119Pseudoxanthomonas spadix BD-a59 chromosome, complete genometwin-arginine translocation pathway signal2e-0653.9
NC_007643:3799425:3802218380221838034321215Rhodospirillum rubrum ATCC 11170, complete genomeamide-urea binding protein2e-0654.3
NC_010511:4258000:4277695427769542789121218Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor2e-0654.3
NC_008786:4216152:4233994423399442352261233Verminephrobacter eiseniae EF01-2, complete genomeExtracellular ligand-binding receptor3e-0653.5
NC_007503:2010858:2024141202414120253251185Carboxydothermus hydrogenoformans Z-2901, complete genomehigh affinity branched-chain amino acid ABC transporter, amino acid-binding protein5e-0652.8
NC_009921:3473854:3477569347756934788161248Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-0551.6