Pre_GI: BLASTP Hits

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Query: NC_007952:1416000:1422467 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1422467, End: 1423063, Length: 597

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006351:2759708:276157627615762762172597Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein7e-79293
NC_009078:2718741:272248427224842723071588Burkholderia pseudomallei 1106a chromosome II, complete sequencenudix hydrolase, YffH family1e-78292
NC_007435:1446916:145065914506591451246588Burkholderia pseudomallei 1710b chromosome II, complete sequenceconserved hypothetical protein TIGR000521e-78292
NC_008060:476861:505264505264505863600Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceNucleoside diphosphate pyrophosphatase2e-62238
NC_008542:1021848:104991110499111050510600Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceNucleoside diphosphate pyrophosphatase2e-62238
NC_010508:981377:100316710031671003766600Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceNUDIX hydrolase2e-62238
NC_010623:188143:191830191830192417588Burkholderia phymatum STM815 chromosome 2, complete sequenceNUDIX hydrolase4e-62237
NC_015138:2110149:212599021259902126571582Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completenucleoside diphosphate pyrophosphatase1e-61236
NC_008752:3684739:368473936847393685347609Acidovorax avenae subsp. citrulli AAC00-1, complete genomeNUDIX hydrolase3e-61234
NC_014100:172452:171868171868172455588Caulobacter segnis ATCC 21756 chromosome, complete genomeNUDIX hydrolase3e-57221
NC_002696:3759551:377783537778353778422588Caulobacter crescentus CB15, complete genomehypothetical protein4e-57220
NC_009832:2460027:246088324608832461479597Serratia proteamaculans 568, complete genomeNUDIX hydrolase2e-56218
NC_013521:107937:124163124163124873711Sanguibacter keddieii DSM 10542, complete genomeprotein containing C-terminal region of TrgB protein4e-51201
NC_017186:5184000:519829351982935198850558Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein7e-49193
NC_014318:5183975:519825951982595198816558Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein7e-49193
NC_010572:1293786:129721412972141297921708Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein8e-49193
NC_013421:1038500:104165510416551042236582Pectobacterium wasabiae WPP163, complete genomeNUDIX hydrolase4e-48191
NC_012917:833721:855945855945856526582Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeNUDIX hydrolase4e-48190
NC_004547:913553:937554937554938135582Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative mutT/NUDIX family protein1e-47189
NC_006155:3237990:325774432577443258367624Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-46185
NC_010634:3155741:317525631752563175852597Yersinia pseudotuberculosis PB1/+, complete genomeNUDIX hydrolase4e-46184
NC_012880:3748665:376694937669493767524576Dickeya dadantii Ech703, complete genomeNUDIX hydrolase2e-46184
NC_014837:3126543:313990131399013140479579Pantoea sp. At-9b chromosome, complete genomeNUDIX hydrolase1e-45182
NC_015638:2588954:260159626015962602174579Lacinutrix sp. 5H-3-7-4 chromosome, complete genomenucleoside diphosphate pyrophosphatase2e-45181
NC_015761:2444833:245193024519302452505576Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-44179
NC_011666:2435438:243962924396292440225597Methylocella silvestris BL2, complete genomeNUDIX hydrolase1e-40166
NC_011420:1178762:119509311950931195734642Rhodospirillum centenum SW, complete genomehypothetical protein4e-1581.3
NC_004578:5623783:564362756436275644244618Pseudomonas syringae pv. tomato str. DC3000, complete genomemutT/nudix family protein2e-1375.5
NC_008344:2465042:248701224870122487647636Nitrosomonas eutropha C91, complete genomeNucleoside diphosphate pyrophosphatase2e-1272.4
NC_016632:1399993:140161314016131402266654Serratia symbiotica str. 'Cinara cedri' chromosome, completeADP-ribose pyrophosphatase1e-1169.7
NC_012115:1122905:114326811432681143843576Nautilia profundicola AmH, complete genomehypothetical protein2e-1065.5
NC_010468:694943:716660716660717289630Escherichia coli ATCC 8739, complete genomeADP-ribose diphosphatase7e-1063.9
AP010958:3787991:378799137879913788620630Escherichia coli O103:H2 str. 12009 DNA, complete genomeADP-ribose pyrophosphatase6e-1063.9
NC_012947:708064:728457728457729086630Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeADP-ribose pyrophosphatase NudF6e-1063.9
NC_013353:3787991:378799137879913788620630Escherichia coli O103:H2 str. 12009, complete genomeADP-ribose pyrophosphatase6e-1063.9
NC_007643:1781723:179533217953321795964633Rhodospirillum rubrum ATCC 11170, complete genomeNucleoside diphosphate pyrophosphatase2e-0962
NC_008789:7347:298992989930540642Halorhodospira halophila SL1, complete genomeNUDIX hydrolase1e-0860.1
NC_019897:2004050:202928420292842029856573Thermobacillus composti KWC4 chromosome, complete genomeADP-ribose pyrophosphatase2e-0858.9
NC_015931:71361:756267562676159534Pyrolobus fumarii 1A, complete genomeNUDIX hydrolase3e-0858.5
NC_011661:1049767:106594210659421066496555Dictyoglomus turgidum DSM 6724, complete genomeNUDIX hydrolase3e-0755.1
NC_007802:1991211:1991211199121119923381128Jannaschia sp. CCS1, complete genomeNucleoside diphosphate pyrophosphatase1e-0653.1
NC_009004:2055563:205556320555632056147585Lactococcus lactis subsp. cremoris MG1363, complete genomeADP-ribose pyrophosphatase2e-0652
NC_014654:1548194:155400015540001554533534Halanaerobium sp. 'sapolanicus' chromosome, complete genomeNUDIX hydrolase5e-0650.8