Pre_GI: BLASTP Hits

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Query: NC_007952:1416000:1418343 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1418343, End: 1419743, Length: 1401

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012721:770651:830262830262831203942Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein1e-87323
NC_015138:2025000:203808820380882039062975Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeornithine cyclodeaminase/mu-crystallin2e-79296
NC_014761:1321187:132335113233511324247897Oceanithermus profundus DSM 14977 chromosome, complete genomeornithine cyclodeaminase8e-54211
NC_016629:2784000:278836227883622789264903Desulfovibrio africanus str. Walvis Bay chromosome, completeornithine cyclodeaminase/mu-crystallin3e-42172
NC_013526:911909:940597940597941505909Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeOrnithine cyclodeaminase2e-25117
NC_004461:277291:316851316851317801951Staphylococcus epidermidis ATCC 12228, complete genomeornithine cyclodeaminase3e-25117
NC_007929:1290568:131007413100741311060987Lactobacillus salivarius subsp. salivarius UCC118, complete genomeOrnithine cyclodeaminase3e-21103
NC_007168:2448422:245152424515242452483960Staphylococcus haemolyticus JCSC1435, complete genomeornithine cyclodeaminase5e-2099.4
NC_015957:7348269:738051373805137381427915Streptomyces violaceusniger Tu 4113 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin5e-2099.4
NC_017276:1491473:151011115101111511040930Sulfolobus islandicus REY15A chromosome, complete genomeornithine cyclodeaminase/mu-crystallin7e-2099
NC_017275:1635959:165459616545961655525930Sulfolobus islandicus HVE10/4 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin7e-2099
NC_012726:1611936:163051516305151631444930Sulfolobus islandicus M.16.4 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin7e-2099
NC_012622:1646000:166239016623901663319930Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin3e-1996.7
NC_012623:960327:963301963301964230930Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin3e-1996.7
NC_013769:1705500:172354817235481724477930Sulfolobus islandicus L.D.8.5 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin3e-1996.7
NC_020164:2219612:221961222196122220559948Staphylococcus warneri SG1, complete genomeornithine cyclodeaminase9e-1995.1
NC_012587:3613162:361933436193343620281948Rhizobium sp. NGR234, complete genomeornithine cyclodeaminase/mu-crystallin family protein9e-1995.1
NC_012588:1585808:160438516043851605314930Sulfolobus islandicus M.14.25 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin3e-1893.6
NC_010511:4258000:428974542897454290044300Methylobacterium sp. 4-46 chromosome, complete genome1e-1791.7
NC_011985:61003:654806548066430951Agrobacterium radiobacter K84 chromosome 1, complete genomeornithine cyclodeaminase protein2e-1790.5
NC_010999:349252:354632354632355627996Lactobacillus casei, complete genomeOrnithine cyclodeaminase/mu-crystallin:Shikimate/quinate 5-dehydrogenase5e-1686.3
NC_014334:369974:377906377906378901996Lactobacillus casei str. Zhang chromosome, complete genomeputative ornithine cyclodeaminase5e-1686.3
NC_008148:2231045:226032522603252261310986Rubrobacter xylanophilus DSM 9941, complete genome5e-1685.9
NC_014507:2568933:258515825851582586093936Methanoplanus petrolearius DSM 11571 chromosome, complete genomeornithine cyclodeaminase2e-1584
NC_002754:319315:321348321348322277930Sulfolobus solfataricus P2, complete genomeOrnithine cyclodeaminase related protein (ocd-like1)2e-1584
NC_010994:57362:611626116262109948Rhizobium etli CIAT 652, complete genomeornithine cyclodeaminase protein7e-1582.4
NC_015320:790137:8061088061088071151008Archaeoglobus veneficus SNP6 chromosome, complete genomealanine dehydrogenase1e-1481.3
NC_013202:906044:935148935148936140993Halomicrobium mukohataei DSM 12286, complete genomeOrnithine cyclodeaminase2e-1480.9
NC_019962:1750497:180660218066021807591990Natrinema pellirubrum DSM 15624, complete genomeputative ornithine cyclodeaminase, mu-crystallin4e-1479.7
NC_012850:4422966:442742644274264428373948Rhizobium leguminosarum bv. trifolii WSM1325, complete genomeOrnithine cyclodeaminase8e-1479
NC_008380:58232:620456204562992948Rhizobium leguminosarum bv. viciae 3841, complete genomeOrnithine cyclodeaminase (OCD).8e-1375.5
NC_009380:1177316:118035711803571181346990Salinispora tropica CNB-440 chromosome, complete genomeornithine cyclodeaminase2e-1274.3
NC_007761:57199:610116101161958948Rhizobium etli CFN 42, complete genomeornithine cyclodeaminase protein2e-1273.9
NC_013744:300000:312490312490313479990Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeOrnithine cyclodeaminase7e-1272.4
NC_009464:1397739:140147014014701402441972Uncultured methanogenic archaeon RC-I, complete genomeornithine cyclodeaminase8e-1272
NC_015727:1294532:132413713241371325135999Cupriavidus necator N-1 plasmid BB1p, complete sequenceornithine cyclodeaminase Ocd3e-1067
NC_009832:3313058:332765333276533328609957Serratia proteamaculans 568, complete genomeOrnithine cyclodeaminase9e-1065.5
NC_013173:1231213:125346112534611254420960Desulfomicrobium baculatum DSM 4028, complete genomeOrnithine cyclodeaminase2e-0963.9
NC_007802:1484641:149996414999641500908945Jannaschia sp. CCS1, complete genomeornithine cyclodeaminase/mu-crystallin1e-0861.6
NC_018000:1852691:186701018670101867891882Sinorhizobium fredii USDA 257 chromosome, complete genomeornithine cyclodeaminase 26e-0859.3
NC_015591:1161007:116671411667141167682969Sinorhizobium meliloti AK83 chromosome 3, complete sequenceornithine cyclodeaminase/mu-crystallin9e-0858.5
NC_015151:1872280:188119418811941882159966Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeornithine cyclodeaminase5e-0756.2
NC_003065:27163:5838358383594981116Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceornithine cyclodeaminase6e-0756.2
NC_003308:1:2498024980260951116Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceornithine cyclodeaminase6e-0756.2
NC_016582:7033000:703840670384067039053648Streptomyces bingchenggensis BCW-1 chromosome, complete genomeornithine cyclodeaminase7e-0755.8
NC_015312:1371530:139585813958581396772915Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin7e-0755.8
NC_008752:166877:165897165897166880984Acidovorax avenae subsp. citrulli AAC00-1, complete genomeOrnithine cyclodeaminase7e-0755.8
NC_009376:1291901:129190112919011292770870Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeornithine cyclodeaminase/mu-crystallin7e-0755.8
NC_020126:5470090:5475502547550254766021101Myxococcus stipitatus DSM 14675, complete genomeornithine cyclodeaminase1e-0654.7
NC_016002:2652500:265508426550842656022939Pseudogulbenkiania sp. NH8B, complete genomeornithine cyclodeaminase2e-0653.9
NC_015138:201323:202271202271203254984Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeOrnithine cyclodeaminase3e-0653.5