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Query: NC_007951:570500:601109 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 601109, End: 602272, Length: 1164

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010511:7024412:7059716705971670608011086Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein3e-57223
NC_003047:74986:9461994619957671149Sinorhizobium meliloti 1021, complete genomehypothetical protein4e-57222
NC_012988:4387735:4392854439285443939931140Methylobacterium extorquens DM4, complete genomehypothetical protein6e-55214
NC_020211:4598217:461942546194254620141717Serratia marcescens WW4, complete genomeHPP family protein7e-43174
NC_020181:421941:421941421941422678738Enterobacter aerogenes EA1509E, complete genomeProbable transmembrane protein1e-39164
NC_016614:1152500:117220611722061173102897Vibrio sp. EJY3 chromosome 2, complete sequenceCBS domain-containing protein2e-25117
NC_008571:2229369:223015822301582230844687Gramella forsetii KT0803, complete genomeHPP family protein4e-1995.9
NC_013385:1882549:189815418981541898726573Ammonifex degensii KC4, complete genomeHPP family protein1e-1480.9
NC_008343:1250869:125601112560111256592582Granulibacter bethesdensis CGDNIH1, complete genomehypothetical membrane spanning protein2e-1480.5
NC_010725:3917369:395040739504073950910504Methylobacterium populi BJ001, complete genomeHPP family protein?3e-1066.6
NC_019978:1244000:124860512486051249129525Halobacteroides halobius DSM 5150, complete genomeCBS-domain-containing membrane protein2e-0964.3
NC_015589:626321:640731640731641303573Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeHPP family protein7e-0962
NC_019897:209523:227397227397227822426Thermobacillus composti KWC4 chromosome, complete genomehypothetical protein2e-0757.4