Pre_GI: BLASTP Hits

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Query: NC_007951:570500:597074 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 597074, End: 597886, Length: 813

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007434:3588081:362148936214893622316828Burkholderia pseudomallei 1710b chromosome I, complete sequenceYggB6e-90330
NC_009076:3179662:321306932130693213896828Burkholderia pseudomallei 1106a chromosome I, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family6e-90330
NC_008836:1072721:110612811061281106955828Burkholderia mallei NCTC 10229 chromosome II, complete sequencemechanosensitive ion channel YggB6e-90330
NC_009074:3163362:319677131967713197598828Burkholderia pseudomallei 668 chromosome I, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family6e-90330
NC_008785:516500:516579516579517406828Burkholderia mallei SAVP1 chromosome II, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family6e-90330
NC_009080:2123987:215739421573942158221828Burkholderia mallei NCTC 10247 chromosome II, complete sequencetransporter, small conductance mechanosensitive ion channel (MscS) family6e-90330
NC_006350:3329477:336284033628403363712873Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein1e-89329
NC_006348:2372945:240630724063072407179873Burkholderia mallei ATCC 23344 chromosome 1, complete sequencemechanosensitive ion channel YggB1e-89329
NC_010084:2822295:285397928539792854791813Burkholderia multivorans ATCC 17616 chromosome 1, completeMscS mechanosensitive ion channel1e-86319
NC_015381:766355:769416769416770231816Burkholderia gladioli BSR3 chromosome 1, complete sequenceYggB5e-86317
NC_007510:759905:762827762827763639813Burkholderia sp. 383 chromosome 1, complete sequenceMscS Mechanosensitive ion channel1e-85316
NC_011000:3514338:355662235566223557434813Burkholderia cenocepacia J2315 chromosome 1, complete sequencemechanosensitive ion channel protein1e-84313
NC_008060:306170:311458311458312270813Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceMscS Mechanosensitive ion channel4e-83307
NC_008542:855347:860633860633861445813Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceMscS Mechanosensitive ion channel4e-83307
NC_010508:809974:813030813030813842813Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceMscS Mechanosensitive ion channel4e-83307
NC_016940:3600749:362449536244953625313819Saprospira grandis str. Lewin chromosome, complete genomemechanosensitive ion channel protein MscS2e-29129
NC_017192:497950:510259510259511119861Arcobacter sp. L, complete genomemechanosensitive ion channel2e-26119
NC_012668:83641:108699108699109562864Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-23108
NC_009092:1305355:132588213258821326706825Shewanella loihica PV-4, complete genomeMscS Mechanosensitive ion channel1e-20100
NC_009654:4253431:425706542570654257895831Marinomonas sp. MWYL1, complete genomeMscS mechanosensitive ion channel2e-1996.7
NC_014844:1818939:183836918383691839220852Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomemechanosensitive ion channel protein MscS2e-1893.2
NC_007005:4857768:487202348720234872853831Pseudomonas syringae pv. syringae B728a, complete genomeMscS Mechanosensitive ion channel2e-1892.8
NC_013316:1:163741637417255882Clostridium difficile R20291, complete genomeputative mechanosensitive ion channel protein4e-1892
NC_004578:4940000:495636049563604957190831Pseudomonas syringae pv. tomato str. DC3000, complete genomemechanosensitive ion channel family protein7e-1891.3
NC_015144:1333179:133443413344341335351918Weeksella virosa DSM 16922 chromosome, complete genomeMscS Mechanosensitive ion channel7e-1891.3
NC_008261:225425:249255249255250070816Clostridium perfringens ATCC 13124, complete genomemechanosensitive ion channel family protein1e-1790.5
NC_003366:255480:279879279879280694816Clostridium perfringens str. 13, complete genomehypothetical protein1e-1790.5
NC_008262:227354:251679251679252494816Clostridium perfringens SM101, complete genomeMechanosensitive ion channel family1e-1790.5
NC_009089:1:166121661217493882Clostridium difficile 630, complete genomeputative mechanosensitive ion channel protein1e-1687.4
NC_020541:3655223:366851336685133669397885Rhodanobacter sp. 2APBS1, complete genomesmall-conductance mechanosensitive channel2e-1686.7
NC_019942:1211535:123989512398951240713819Aciduliprofundum sp. MAR08-339, complete genomesmall-conductance mechanosensitive channel9e-1684
NC_014355:243543:243543243543244343801Candidatus Nitrospira defluvii, complete genomesmall-conductance mechanosensitive channel2e-1582.8
NC_017080:50000:568555685557832978Phycisphaera mikurensis NBRC 102666, complete genomeputative small-conductance mechanosensitive channel3e-1479.3
NC_007498:357484:385326385326386180855Pelobacter carbinolicus DSM 2380, complete genomesmall-conductance mechanosensitive channel7e-1477.8
NC_007517:2926792:293255229325522933448897Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel5e-1065.1
NC_015556:515641:5295425295425329013360Pseudomonas fulva 12-X chromosome, complete genomeMscS Mechanosensitive ion channel8e-1064.3
NC_007298:2947200:295468129546812955511831Dechloromonas aromatica RCB, complete genomeMscS Mechanosensitive ion channel:Conserved TM helix1e-0963.9
NC_009428:833701:8347408347408372892550Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomemechanosensitive ion channel MscS1e-0963.5
NC_014658:701020:722479722479723243765Methanothermus fervidus DSM 2088 chromosome, complete genomemscs mechanosensitive ion channel2e-0963.2
NC_015385:2505977:252451125245112525320810Treponema succinifaciens DSM 2489 chromosome, complete genomeMscS Mechanosensitive ion channel5e-0961.6
NC_003911:2042389:2043404204340420458362433Silicibacter pomeroyi DSS-3, complete genomemechanosensitive ion channel family protein3e-0859.3
NC_012724:1781554:1802139180213918045742436Burkholderia glumae BGR1 chromosome 1, complete genomeMscS Mechanosensitive ion channel3e-0859.3
NC_014471:674500:709666709666710502837Ignisphaera aggregans DSM 17230 chromosome, complete genomeMscS Mechanosensitive ion channel4e-0858.9
NC_007802:1991211:1993442199344219958322391Jannaschia sp. CCS1, complete genomeMscS Mechanosensitive ion channel6e-0858.2
NC_016614:1543333:1545084154508415476602577Vibrio sp. EJY3 chromosome 2, complete sequencepotassium efflux system kefA / Small-conductance mechanosensitive channel7e-0858.2
NC_004459:1:77407740102562517Vibrio vulnificus CMCP6 chromosome I, complete sequenceSmall-conductance mechanosensitive channel1e-0757.4
NC_013421:1505176:1520963152096315234162454Pectobacterium wasabiae WPP163, complete genomeMscS Mechanosensitive ion channel1e-0757
NC_012917:3241196:3244755324475532472022448Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeMscS Mechanosensitive ion channel1e-0757
NC_009483:2401209:2417464241746424185431080Geobacter uraniireducens Rf4 chromosome, complete genomemechanosensitive ion channel MscS3e-0755.8
NC_010552:2331486:2331486233148623339302445Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceMscS Mechanosensitive ion channel4e-0755.5
NC_010515:2037825:2057870205787020603142445Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceMscS Mechanosensitive ion channel4e-0755.5
NC_019940:2731105:2734172273417227356771506Thioflavicoccus mobilis 8321 chromosome, complete genomesmall-conductance mechanosensitive channel4e-0755.5
NC_011989:2262881:2262881226288122653582478Agrobacterium vitis S4 chromosome 1, complete sequencepotassium efflux system KEFA5e-0755.1
NC_013592:3212834:3213829321382932162372409Dickeya dadantii Ech586, complete genomeMscS Mechanosensitive ion channel5e-0755.1
NC_014532:1191267:1197911119791112014323522Halomonas elongata DSM 2581, complete genomeK05802 potassium efflux system protein KefA5e-0755.1
NC_013173:1305916:1308676130867613100131338Desulfomicrobium baculatum DSM 4028, complete genomeMscS Mechanosensitive ion channel7e-0754.7
NC_004663:3801071:3816241381624138180911851Bacteroides thetaiotaomicron VPI-5482, complete genomeputative mechano-sensitive ion channel8e-0754.3
NC_015567:1127780:1162370116237011657563387Serratia sp. AS9 chromosome, complete genomemechanosensitive ion channel MscS9e-0754.3
NC_015566:1127595:1162185116218511655713387Serratia sp. AS12 chromosome, complete genomemechanosensitive ion channel MscS9e-0754.3
NC_015846:790374:791877791877792707831Capnocytophaga canimorsus Cc5 chromosome, complete genomehypothetical protein2e-0653.1
NC_008800:3330944:3368224336822433715713348Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,potassium efflux protein KefA4e-0652.4
NC_005061:65861:7718277182804393258Candidatus Blochmannia floridanus, complete genomehypothetical protein4e-0652
NC_014933:1081844:1084204108420410860121809Bacteroides helcogenes P 36-108 chromosome, complete genomeMscS Mechanosensitive ion channel5e-0651.6