Pre_GI: BLASTP Hits

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Query: NC_007951:570500:579985 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 579985, End: 580206, Length: 222

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012791:4794362:481454548145454814787243Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family8e-1062.4
NC_017271:4852351:485831148583114858556246Xanthomonas campestris pv. raphani 756C chromosome, completeDNA-binding protein2e-0754.7
NC_020541:1786500:179882317988231799110288Rhodanobacter sp. 2APBS1, complete genomeputative transcriptional regulator5e-0753.1
NC_008687:965152:972058972058972303246Paracoccus denitrificans PD1222 chromosome 2, complete sequencehelix-turn-helix domain protein8e-0752.4
NC_014323:4665610:467335646733564673646291Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein3e-0650.4