Pre_GI: BLASTP Hits

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Query: NC_007951:4608560:4631676 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4631676, End: 4632914, Length: 1239

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016589:2875000:2907735290773529089791245Burkholderia sp. YI23 chromosome 1, complete sequencemultifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase0653
NC_013889:2561381:2582500258250025837321233Thioalkalivibrio sp. K90mix chromosome, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase9e-114410
NC_008463:632869:6547526547526559841233Pseudomonas aeruginosa UCBPP-PA14, complete genometRNA nucleotidyl transferase8e-110397
NC_012967:3113768:3134725313472531359631239Escherichia coli B str. REL606 chromosome, complete genomemultifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase2e-108393
CP002185:3393813:3414622341462234158601239Escherichia coli W, complete genomefused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase7e-108390
NC_008260:2340824:2340824234082423420561233Alcanivorax borkumensis SK2, complete genometRNA cytidylyltransferase5e-107388
NC_020541:268406:2745942745942758411248Rhodanobacter sp. 2APBS1, complete genometRNA nucleotidyltransferase/poly(A) polymerase1e-105383
NC_014837:3739408:3739408373940837406401233Pantoea sp. At-9b chromosome, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase5e-101368
NC_016612:627118:6462976462976475381242Klebsiella oxytoca KCTC 1686 chromosome, complete genomemultifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase7e-101367
NC_016816:674171:6939836939836952001218Pantoea ananatis LMG 5342, complete genometRNA nucleotidyltransferase1e-99363
NC_005061:65861:6677666776680111236Candidatus Blochmannia floridanus, complete genometRNA nucleotidyltransferase2e-73276
NC_009434:796878:8208338208338222301398Pseudomonas stutzeri A1501, complete genometRNA nucleotidyl transferase2e-70266
NC_014914:439285:4421214421214432571137Taylorella equigenitalis MCE9 chromosome, complete genometRNA nucleotidyltransferase4e-65248
NC_004545:15650:6471764717659761260Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genometRNA nucleotidyltransferase1e-57224
NC_009465:171000:1956051956051966691065Candidatus Vesicomyosocius okutanii HA, complete genometRNA nucleotidyltransferase (CCA-adding enzyme)1e-54214
NC_015696:610000:6100386100386111441107Francisella sp. TX077308 chromosome, complete genometRNA nucleotidyltransferase5e-48192
NC_020409:437781:4388004388004399061107Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completePolynucleotide adenylyltransferase/metal dependent phosphohydrolase2e-27124
NC_017192:497950:5110945110945124911398Arcobacter sp. L, complete genometRNA nucleotidyltransferase/poly(A) polymerase3e-27122
NC_010814:243384:2580972580972592931197Geobacter lovleyi SZ, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase5e-25115
NC_013171:416279:4203154203154216671353Anaerococcus prevotii DSM 20548, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase3e-24113
NC_015510:1012195:1034797103479710362121416Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase7e-24112
NC_019908:2312194:2319136231913623205301395Brachyspira pilosicoli P43/6/78 chromosome, complete genomepolyA polymerase family protein2e-23110
NC_018604:2350054:2361636236163623630301395Brachyspira pilosicoli WesB complete genomepolyA polymerase family protein2e-23110
NC_014330:888366:8998558998559012491395Brachyspira pilosicoli 95/1000 chromosome, complete genomepolyA polymerase family protein2e-23110
NC_018607:2231975:2243583224358322449771395Brachyspira pilosicoli B2904 chromosome, complete genomepolyA polymerase family protein2e-23110
NC_015953:3684065:3710049371004937115661518Streptomyces sp. SirexAA-E chromosome, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase5e-22105
NC_003454:865368:8667398667398680941356Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completePoly(A) polymerase1e-21104
NC_003888:4251867:4290216429021642916671452Streptomyces coelicolor A3(2), complete genomeRNA nucleotidyltransferase5e-21102
NC_003155:5253923:5266959526695952684011443Streptomyces avermitilis MA-4680, complete genomeRNA nucleotidyltransferase4e-2099.4
NC_018750:3988196:3990822399082239922461425Streptomyces venezuelae ATCC 10712, complete genometRNA nucleotidyltransferase7e-2098.6
NC_002932:937157:9385669385669399931428Chlorobium tepidum TLS, complete genomepolyA polymerase family protein1e-1997.8
NC_020125:1853208:1872286187228618737161431Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein3e-1996.7
NC_021182:162236:1658591658591671991341Clostridium pasteurianum BC1, complete genometRNA nucleotidyltransferase/poly(A) polymerase4e-1996.3
NC_013929:5135285:5159095515909551605431449Streptomyces scabiei 87.22 chromosome, complete genomeRNA nucleotidyltransferase4e-1995.9
NC_021177:4041915:4048483404848340499251443Streptomyces fulvissimus DSM 40593, complete genomeRNA nucleotidyltransferase4e-1995.9
NC_016610:1574699:1573283157328315747101428Tannerella forsythia ATCC 43037 chromosome, complete genometRNA nucleotidyltransferase/poly(A) polymerase family protein5e-1892.8
NC_016114:3655005:3665342366534236667871446Streptomyces flavogriseus ATCC 33331 chromosome, complete genomepolynucleotide adenylyltransferase4e-1892.8
NC_013061:987744:1008131100813110095371407Pedobacter heparinus DSM 2366, complete genomePolynucleotide adenylyltransferase region4e-1892.8
NC_013173:1356526:1387166138716613885451380Desulfomicrobium baculatum DSM 4028, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase8e-1891.7
NC_015682:736746:7613547613547628081455Thermodesulfobacterium sp. OPB45 chromosome, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase1e-1791.3
NC_012590:2755429:2770150277015027717871638Corynebacterium aurimucosum ATCC 700975, complete genometRNA nucleotidyltransferase4e-1582.8
NC_015873:1119500:1139059113905911404891431Megasphaera elsdenii DSM 20460, complete genomeHD domain protein2e-1480.9
NC_017095:1461520:1463201146320114658762676Fervidobacterium pennivorans DSM 9078 chromosome, complete genometRNA nucleotidyltransferase/poly(A) polymerase4e-1376.3
NC_010816:1660066:1682613168261316840281416Bifidobacterium longum DJO10A, complete genometRNA nucleotidyltransferase1e-1274.3
NC_015145:4232283:4232283423228342337881506Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometRNA adenylyltransferase5e-1272.8
NC_013174:2712000:2731663273166327331411479Jonesia denitrificans DSM 20603, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase7e-1272
NC_011978:1812000:1826275182627518288692595Thermotoga neapolitana DSM 4359, complete genomeTRNA nucleotidyl transferase-related protein1e-1171.6
NC_011145:306623:3278763278763295461671Anaeromyxobacter sp. K, complete genomepoly(A) polymerase1e-1171.2
NC_007760:308500:3253343253343269831650Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein1e-1170.9
NC_011891:315182:3364073364073380771671Anaeromyxobacter dehalogenans 2CP-1, complete genomepoly(A) polymerase1e-1170.9
NC_014218:1948165:1968854196885419703471494Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase7e-1168.9
NC_008541:4679022:4679022467902246805121491Arthrobacter sp. FB24 chromosome 1, complete sequencemetal dependent phosphohydrolase8e-1168.6
NC_011653:1728000:1738962173896217415412580Thermosipho africanus TCF52B, complete genomepolyA polymerase family protein1e-1067.8
NC_013642:505518:5100135100135126042592Thermotoga naphthophila RKU-10, complete genomePolynucleotide adenylyltransferase region2e-1067
NC_009482:156171:1613421613421625741233Synechococcus sp. RCC307 chromosome, complete genometRNA nucleotidyltransferase/poly(A) polymerase3e-1066.6
NC_011886:4376261:4376261437626143777691509Arthrobacter chlorophenolicus A6, complete genomepolynucleotide adenylyltransferase/metal dependent phosphohydrolase6e-1065.9
NC_011126:1345984:1360945136094513634102466Hydrogenobaculum sp. Y04AAS1, complete genomePolynucleotide adenylyltransferase region2e-0964.3
NC_020126:5777895:5782348578234857836191272Myxococcus stipitatus DSM 14675, complete genomehypothetical protein4e-0963.2
NC_020411:1333352:1351171135117113536362466Hydrogenobaculum sp. HO, complete genomePolynucleotide adenylyltransferase region4e-0962.8
NC_015557:1333158:1350977135097713534422466Hydrogenobaculum sp. 3684 chromosome, complete genomePolynucleotide adenylyltransferase region4e-0962.8
NC_010321:1177238:1177734117773411789001167Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completepolynucleotide adenylyltransferase2e-0860.5
NC_014964:1169925:1169925116992511710911167Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completePolynucleotide adenylyltransferase region2e-0860.5
NC_002620:803696:8218328218328231091278Chlamydia muridarum Nigg, complete genomepoly(A) polymerase family protein2e-0757.4
NC_002939:2337402:2393737239373723950291293Geobacter sulfurreducens PCA, complete genomepolyA polymerase family protein5e-0756.2
NC_010814:903199:9031999031999058412643Geobacter lovleyi SZ, complete genomeCBS domain containing protein5e-0755.8
NC_010475:1563578:1576982157698215782051224Synechococcus sp. PCC 7002, complete genometRNA nucleotidyltransferase/poly(A) polymerase6e-0755.8
NC_019907:773944:7873937873937886521260Liberibacter crescens BT-1 chromosome, complete genometRNA nucleotidyltransferase9e-0755.1
NC_008095:4061899:4078577407857740798451269Myxococcus xanthus DK 1622, complete genometRNA nucleotidyltransferase/poly(A) polymerase family protein1e-0654.7
NC_007530:1459412:1468725146872514699181194Bacillus anthracis str. 'Ames Ancestor', complete genomepolya polymerase1e-0654.7
NC_005945:1459357:1468679146867914698721194Bacillus anthracis str. Sterne, complete genomepolyA polymerase1e-0654.7