Pre_GI: BLASTP Hits

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Query: NC_007951:4576825:4600035 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4600035, End: 4600433, Length: 399

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015422:3513689:351964535196453520067423Alicycliphilus denitrificans K601 chromosome, complete genomeMerR family transcriptional regulator3e-21100
NC_015733:5909821:593330859333085933742435Pseudomonas putida S16 chromosome, complete genomeHg(II) resistance regulatory protein MerR5e-2199.8
NC_010501:2609567:261363626136362614070435Pseudomonas putida W619, complete genometranscriptional regulator, MerR family5e-2199.8
NC_015740:1291739:129835412983541298788435Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeTn501 repressor5e-2199.8
NC_008463:1293079:131117013111701311604435Pseudomonas aeruginosa UCBPP-PA14, complete genomeRegulatory protein merR5e-2199.8
NC_008341:29038:442934429344748456Nitrosomonas eutropha C91 plasmid1, complete sequencetranscriptional regulator, MerR family7e-2199.4
NC_008573:195317:228689228689229144456Shewanella sp. ANA-3 plasmid 1, complete sequencetranscriptional regulator, MerR family7e-2199.4
NC_010410:3606826:364422636442263644681456Acinetobacter baumannii AYE, complete genomeMercuric resistance operon regulatory protein7e-2199.4
NC_008344:1364142:136959713695971370052456Nitrosomonas eutropha C91, complete genometranscriptional regulator, MerR family protein7e-2199.4
NC_003384:109036:114531114531114986456Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidputative mercuric resistance operon regulatory protein7e-2199
NC_017986:1862408:187667818766781877112435Pseudomonas putida ND6 chromosome, complete genomeputative transcriptional regulator MerR9e-2198.6
NC_004757:905417:919523919523919948426Nitrosomonas europaea ATCC 19718, complete genomeBacterial regulatory proteins, MerR family1e-2098.6
NC_008782:1510000:153153815315381531945408Acidovorax sp. JS42, complete genomeputative transcriptional regulator, MerR family1e-2098.6
NC_008344:1:355913559136067477Nitrosomonas eutropha C91, complete genometranscriptional regulator, MerR family protein1e-2098.6
NC_010804:996837:103990310399031040310408Burkholderia multivorans ATCC 17616 chromosome 1, completeMerR family mercuric resistance operon regulatory protein1e-2098.2
NC_010084:2484000:248446324844632484870408Burkholderia multivorans ATCC 17616 chromosome 1, completeMerR family transcriptional regulator1e-2098.2
NC_009434:3611738:370624537062453706643399Pseudomonas stutzeri A1501, complete genomeMerR family transcriptional regulator1e-2098.2
NC_009656:115390:122118122118122516399Pseudomonas aeruginosa PA7 chromosome, complete genomeHg(II)-responsive transcriptional regulator1e-2098.2
NC_009656:44500:105066105066105476411Pseudomonas aeruginosa PA7 chromosome, complete genomeHg(II)-responsive transcriptional regulator3e-2097.1
NC_009659:1984980:198573219857321986166435Janthinobacterium sp. Marseille chromosome, complete genometranscriptional regulator MerR4e-2096.7
NC_009349:78000:821538215382587435Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeputative transcriptional regulator MerR5e-2096.3
NC_003384:157158:174890174890175324435Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidputative mercuric resistance operon regulatory protein5e-2096.3
NC_013365:92973:991879918799621435Escherichia coli O111:H- str. 11128 plasmid pO111_1, completeputative transcriptional regulator MerR5e-2096.3
NC_016860:4055117:408876240887624089196435Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator MerR5e-2096.3
NC_010943:2422838:244317824431782443585408Stenotrophomonas maltophilia K279a, complete genomeputative MerR-family transcriptional regulator1e-1995.1
NC_011138:3182807:320451732045173204903387Alteromonas macleodii 'Deep ecotype', complete genomeHg(II)-responsive transcriptional regulator5e-1993.2
NC_015422:2858228:286535728653572865800444Alicycliphilus denitrificans K601 chromosome, complete genomeMerR family transcriptional regulator4e-1993.2
NC_008782:2857899:286344128634412863956516Acidovorax sp. JS42, complete genomeputative transcriptional regulator, MerR family4e-1993.2
NC_008740:257434:280490280490280915426Marinobacter aquaeolei VT8, complete genomeputative transcriptional regulator, MerR family3e-1890.1
NC_008573:195317:203557203557203949393Shewanella sp. ANA-3 plasmid 1, complete sequencetranscriptional regulator, MerR family7e-1785.9
NC_006363:36959:583585835858759402Nocardia farcinica IFM 10152 plasmid pNF2, complete sequenceputative transcriptional regulator2e-1684
NC_011138:3182807:319814931981493198544396Alteromonas macleodii 'Deep ecotype', complete genomeHg(II)-responsive transcriptional regulator4e-1683.6
NC_011894:4911500:492472249247224925156435Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, MerR family2e-1581.3
NC_008702:1432952:147196814719681472363396Azoarcus sp. BH72, complete genomeputative regulatory protein2e-1580.9
NC_011757:1091486:110969411096941110095402Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, MerR family5e-1476.6
NC_011992:2279752:230185023018502302353504Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family5e-1476.6
NC_012982:711122:731780731780732181402Hirschia baltica ATCC 49814, complete genometranscriptional regulator, MerR family4e-1476.6
NC_013440:3870697:388797238879723888379408Haliangium ochraceum DSM 14365, complete genometranscriptional regulator, MerR family2e-1374.7
NC_010571:5650806:565551656555165655920405Opitutus terrae PB90-1, complete genometranscriptional regulator, MerR family4e-1373.6
NC_013960:1693643:170913517091351709623489Nitrosococcus halophilus Nc4 chromosome, complete genomeTranscription regulator MerR DNA binding protein5e-1372.8
NC_009720:3210387:322263632226363223058423Xanthobacter autotrophicus Py2, complete genomeMerR family transcriptional regulator1e-1272
NC_012587:2298324:230967123096712310054384Rhizobium sp. NGR234, complete genomeputative transcriptional regulator, MerR family1e-1271.6
NC_015186:2908387:290995229099522910350399Acidiphilium multivorum AIU301, complete genomeMerR family transcriptional regulator1e-1271.6
NC_010571:5650806:5651894565189456574565563Opitutus terrae PB90-1, complete genome2e-1271.2
NC_012483:1408500:144328314432831443693411Acidobacterium capsulatum ATCC 51196, complete genometranscriptional regulator, MerR family3e-1270.9
NC_004461:73390:832838328383690408Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein4e-1270.1
NC_008344:49039:838088380884227420Nitrosomonas eutropha C91, complete genometranscriptional regulator, MerR family protein5e-1269.7
NC_008347:2515921:253804725380472538490444Maricaulis maris MCS10, complete genometranscriptional regulator, MerR family6e-1269.7
NC_009668:445134:485515485515485955441Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceMerR family transcriptional regulator9e-1268.9
NC_009668:529175:531374531374531790417Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceMerR family transcriptional regulator1e-1168.2
NC_016147:623666:638016638016638429414Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative transcriptional regulator2e-1167.8
NC_015684:2000771:200669720066972007122426Oligotropha carboxidovorans OM5 chromosome, complete genomeMerR family transcriptional regulator2e-1167.4
NC_016616:1091606:109800110980011098429429Dechlorosoma suillum PS chromosome, complete genomeCu(I)-responsive transcriptional regulator2e-1167.4
NC_013282:3962188:398362139836213984046426Cronobacter turicensis, complete genomeHTH-type transcriptional regulator zntR3e-1167
NC_020911:3475096:347754534775453477955411Octadecabacter antarcticus 307, complete genomeputative HTH-type transcriptional regulator9e-1165.5
NC_021172:169215:193706193706194128423Hyphomicrobium denitrificans 1NES1, complete genomeMerR family transcriptional regulator9e-1165.5
CP002185:3627992:365167436516743652099426Escherichia coli W, complete genomeDNA-binding transcriptional activator in response to Zn(II)3e-1063.9
NC_009434:695582:762792762792763244453Pseudomonas stutzeri A1501, complete genometranscriptional regulator CadR3e-1063.5
NC_017904:3084872:309662730966273097076450Mycobacterium sp. MOTT36Y chromosome, complete genometranscriptional regulator7e-1062.8
NC_012982:711122:733630733630734016387Hirschia baltica ATCC 49814, complete genometranscriptional regulator, MerR family7e-1062.8
NC_006932:1939145:195924319592431959665423Brucella abortus biovar 1 str. 9-941 chromosome I, completetranscriptional regulator, MerR family8e-1062.4
NC_007618:1937261:195636219563621956784423Brucella melitensis biovar Abortus 2308 chromosome I, completeBacterial regulatory protein, MerR family8e-1062.4
NC_004310:1923404:194251819425181942940423Brucella suis 1330 chromosome I, complete sequencetranscriptional regulator, MerR family8e-1062.4
NC_010742:1938428:195752919575291957951423Brucella abortus S19 chromosome 1, complete sequenceBacterial regulatory protein, MerR family8e-1062.4
NC_003317:48375:508935089351315423Brucella melitensis 16M chromosome I, complete sequenceMERCURIC RESISTANCE OPERON REGULATORY PROTEIN8e-1062.4
NC_010103:1920585:194069019406901941112423Brucella canis ATCC 23365 chromosome I, complete sequenceHeavy metal-dependent transcription regulator 18e-1062.4
NC_015857:1954173:197327919732791973701423Brucella pinnipedialis B2/94 chromosome chromosome 1, completeMerR family transcriptional regulator8e-1062.4
NC_017506:3717261:373431737343173734760444Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator9e-1062.4
NC_009505:1928000:194709419470941947516423Brucella ovis ATCC 25840 chromosome I, complete sequenceMerR family transcriptional regulator8e-1062.4
NC_012441:1940545:196064619606461961068423Brucella melitensis ATCC 23457 chromosome I, complete sequenceMerR family transcriptional regulator8e-1062.4
NC_013792:109203:115508115508115993486Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencemercuric resistance operon regulatory protein MerR7e-1062.4
NC_017251:1923391:194250519425051942927423Brucella suis 1330 chromosome I, complete genomeMerR family transcriptional regulator8e-1062.4
NC_017248:1933357:195246519524651952887423Brucella melitensis NI chromosome chromosome I, complete sequenceMerR family transcriptional regulator8e-1062.4
NC_017246:1942293:196140019614001961822423Brucella melitensis M5-90 chromosome chromosome I, completeMerR family transcriptional regulator8e-1062.4
NC_017244:1941974:196108119610811961503423Brucella melitensis M28 chromosome chromosome 1, complete sequenceBacterial regulatory protein, MerR family8e-1062.4
NC_016797:1924248:194336019433601943782423Brucella suis VBI22 chromosome I, complete sequenceMerR family transcriptional regulator8e-1062.4
NC_016795:456110:458613458613459035423Brucella abortus A13334 chromosome 1, complete sequenceMerR family transcriptional regulator8e-1062.4
NC_016778:1216739:121927212192721219694423Brucella canis HSK A52141 chromosome 1, complete sequenceMerR family transcriptional regulator8e-1062.4
NC_009439:918534:924888924888925319432Pseudomonas mendocina ymp, complete genomeMerR family transcriptional regulator1e-0962
NC_011992:1179084:119333011933301193809480Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family1e-0961.6
NC_017506:93494:947149471495127414Marinobacter adhaerens HP15 chromosome, complete genomeMerR family transcriptional regulator2e-0961.2
NC_016147:730810:730810730810731265456Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeMerR family transcriptional regulator4e-0960.1
NC_009040:43791:599605996060382423Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeputative transcriptional regulator, MerR family4e-0960.1
NC_010169:1739402:175851117585111758933423Brucella suis ATCC 23445 chromosome I, complete sequenceHeavy metal-dependent transcription regulator 15e-0959.7
NC_013446:2820000:284846928484692848915447Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MerR family7e-0959.3
NC_008347:2515921:254309725430972543585489Maricaulis maris MCS10, complete genometranscriptional regulator, MerR family7e-0959.3
NC_013119:1932402:195151319515131951935423Brucella microti CCM 4915 chromosome 1, complete sequenceMerR family transcriptional regulator7e-0959.3
NC_011274:376970:398848398848399312465Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator1e-0858.5
NC_011083:403022:447987447987448451465Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,Cu(I)-responsive transcriptional regulator1e-0858.5
NC_011080:383441:405320405320405784465Salmonella enterica subsp. enterica serovar Newport str. SL254,Cu(I)-responsive transcriptional regulator1e-0858.5
NC_011149:361765:383657383657384121465Salmonella enterica subsp. enterica serovar Agona str. SL483,Cu(I)-responsive transcriptional regulator1e-0858.5
NC_012125:373630:395509395509395973465Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator1e-0858.5
NC_008027:5533311:555116655511665551609444Pseudomonas entomophila L48, complete genometranscriptional regulator CadR1e-0858.5
NC_011386:3723019:372685837268583727277420Oligotropha carboxidovorans OM5, complete genometranscriptional regulator, MerR family1e-0858.2
NC_008750:1253354:126126912612691261733465Shewanella sp. W3-18-1, complete genomeputative transcriptional regulator, MerR family3e-0857.4
NC_013947:4979000:498490749849074985344438Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, MerR family3e-0857.4
NC_011420:69843:929229292293323402Rhodospirillum centenum SW, complete genomeHTH-type transcriptional regulator HmrR3e-0857.4
NC_013508:3387272:338925733892573389718462Edwardsiella tarda EIB202, complete genomezinc-responsive transcriptional regulator2e-0857.4
NC_014815:5888934:589270858927085893130423Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, merr family3e-0857
NC_008228:2450700:246720024672002467589390Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, MerR family4e-0857
NC_010519:1963256:197166419716641972068405Haemophilus somnus 2336 chromosome, complete genomeMerR family transcriptional regulator4e-0856.6
NC_009512:5632591:563709656370965637539444Pseudomonas putida F1, complete genomeputative transcriptional regulator, MerR family5e-0856.6
NC_014910:242845:259708259708260163456Alicycliphilus denitrificans BC chromosome, complete genomecd(ii)/pb(ii)-responsive transcriptional regulator5e-0856.2
NC_010410:3606826:368344636834463683868423Acinetobacter baumannii AYE, complete genomeputative transcriptional regulator (MerR family)2e-0754.7
NC_010410:3606826:361691536169153617337423Acinetobacter baumannii AYE, complete genomeputative transcriptional regulator (MerR family)2e-0754.7
NC_010505:2690939:269694426969442697417474Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, MerR family2e-0754.7
NC_010611:240839:256993256993257400408Acinetobacter baumannii ACICU, complete genomepredicted transcriptional regulator2e-0754.7
NC_011992:2279752:229550822955082295906399Acidovorax ebreus TPSY, complete genometranscriptional regulator, MerR family2e-0754.3
NC_008750:1253354:126959512695951270020426Shewanella sp. W3-18-1, complete genomeputative transcriptional regulator, MerR family2e-0754.3
NC_002927:2636694:265893026589302659364435Bordetella bronchiseptica RB50, complete genomeputative MerR-family transcriptional regulator3e-0753.9
NC_018697:1343756:138299313829931383400408Cycloclasticus sp. P1 chromosome, complete genomeCd(II)/Pb(II)-responsive transcriptional regulator4e-0753.5
NC_011753:3088952:310870531087053109169465Vibrio splendidus LGP32 chromosome 1, complete genometranscriptional regulator4e-0753.5
NC_008712:250240:253388253388253939552Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative Transcriptional regulator, MerR family6e-0752.8
NC_014836:2919508:595459546361408Desulfurispirillum indicum S5 chromosome, complete genomeCd(II)/Pb(II)-responsive transcriptional regulator6e-0752.8
NC_016147:586433:605799605799606227429Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeMerR family transcriptional regulator6e-0752.8
NC_013446:2820000:282079828207982821217420Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MerR family1e-0651.6
NC_009438:236424:250662250662251126465Shewanella putrefaciens CN-32 chromosome, complete genomeMerR family transcriptional regulator2e-0651.6
NC_011663:2568190:258565425856542586055402Shewanella baltica OS223 chromosome, complete genomeMerR family transcriptional regulator2e-0651.6
NC_007952:1587500:159836415983641598771408Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, MerR family2e-0651.2
NC_007951:3655088:366296836629683663375408Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, MerR family2e-0651.2
NC_007951:3655088:367436536743653674772408Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, MerR family2e-0651.2
NC_007951:1711223:172356517235651723972408Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, MerR family2e-0651.2
NC_011901:491783:501562501562501963402Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeMerR family transcriptional regulator2e-0651.2
NC_008750:450233:454399454399454806408Shewanella sp. W3-18-1, complete genomeputative transcriptional regulator, MerR family2e-0651.2
NC_009438:212476:216839216839217246408Shewanella putrefaciens CN-32 chromosome, complete genomeMerR family transcriptional regulator2e-0651.2
NC_009438:236424:239957239957240364408Shewanella putrefaciens CN-32 chromosome, complete genomeMerR family transcriptional regulator2e-0651.2
NC_011312:3060371:307927830792783079697420Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completetranscriptional regulator2e-0651.2
NC_008782:1308007:131938513193851319819435Acidovorax sp. JS42, complete genomeputative transcriptional regulator, MerR family3e-0650.8
NC_011662:2374955:238002023800202380475456Thauera sp. MZ1T, complete genometranscriptional regulator, MerR family3e-0650.8
NC_014836:2919508:130781307813485408Desulfurispirillum indicum S5 chromosome, complete genomeCd(II)/Pb(II)-responsive transcriptional regulator2e-0650.8
NC_008782:1917634:193523319352331935721489Acidovorax sp. JS42, complete genomeputative transcriptional regulator, MerR family4e-0650.1
NC_015740:2998500:300896630089663009400435Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative MerR family transcriptional regulator5e-0650.1
NC_008573:195317:213486213486213926441Shewanella sp. ANA-3 plasmid 1, complete sequencetranscriptional regulator, MerR family6e-0649.7
NC_008345:4107847:411554441155444115984441Shewanella frigidimarina NCIMB 400, complete genometranscriptional regulator, MerR family protein6e-0649.7
NC_008344:49039:689196891969281363Nitrosomonas eutropha C91, complete genometranscriptional regulator, MerR family protein6e-0649.7