Pre_GI: BLASTP Hits

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Query: NC_007951:3631772:3640688 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 3640688, End: 3641305, Length: 618

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008578:2206500:222396822239682224744777Acidothermus cellulolyticus 11B, complete genometranscriptional regulator, MarR family9e-0857
NC_017188:3900951:390579239057923906244453Bacillus amyloliquefaciens TA208 chromosome, complete genometranscriptional regulator (MarR family) protein6e-0650.8
NC_017191:3901914:390748439074843907936453Bacillus amyloliquefaciens XH7 chromosome, complete genomeMarR family transcriptional regulator6e-0650.8
NC_012659:4273606:427535642753564275808453Bacillus anthracis str. A0248, complete genometranscriptional regulator, MarR family1e-0653.1
NC_003997:4273579:427532942753294275781453Bacillus anthracis str. Ames, complete genometranscriptional regulator, MarR family1e-0653.1
NC_012472:4255729:428006142800614280513453Bacillus cereus 03BB102, complete genometranscriptional regulator, MarR family1e-0653.1
NC_011773:4296082:431302943130294313481453Bacillus cereus AH820 chromosome, complete genomeMarR family transcriptional regulator1e-0653.1
NC_003909:4209385:422859642285964229048453Bacillus cereus ATCC 10987, complete genometranscriptional regulator, MarR family2e-0652.4
NC_004722:4405363:442122944212294421681453Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator, MarR family4e-0651.6
NC_011725:4428726:444589444458944446346453Bacillus cereus B4264 chromosome, complete genomeMarR family transcriptional regulator4e-0651.6
NC_014335:4181710:420604642060464206498453Bacillus cereus biovar anthracis str. CI chromosome, completeorganic hydroperoxide resistance transcriptional regulator1e-0653.1
NC_016779:4217171:423290742329074233359453Bacillus cereus F837/76 chromosome, complete genomeOrganic hydroperoxide resistance transcriptional regulator1e-0653.1
NC_011772:4397599:441354244135424413994453Bacillus cereus G9842, complete genometranscriptional regulator, MarR family5e-0651.2
NC_011969:4140000:416324141632414163693453Bacillus cereus Q1 chromosome, complete genomeMarR family transcriptional regulator1e-0653.1
NC_006322:2851215:287046028704602870903444Bacillus licheniformis ATCC 14580, complete genomeYsmB1e-0550.1
NC_006270:2850354:287024728702472870690444Bacillus licheniformis ATCC 14580, complete genomeprobable transcriptional regulator YsmB1e-0550.1
NC_014171:4317520:433613843361384336590453Bacillus thuringiensis BMB171 chromosome, complete genomeMarR family transcriptional regulator5e-0651.2
NC_017208:4435573:445080544508054451257453Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeMarR family transcriptional regulator4e-0651.6
NC_008600:4263505:428163042816304282112483Bacillus thuringiensis str. Al Hakam, complete genomeorganic hydroperoxide resistance transcriptional regulator, MarR family1e-0653.1
NC_010645:558974:572690572690573193504Bordetella avium 197N, complete genomeMarR-family transcriptional regulator7e-66249
NC_014330:768232:780734780734781171438Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative transcriptional regulator3e-0755.5
NC_018607:2111581:212375921237592124196438Brachyspira pilosicoli B2904 chromosome, complete genometranscriptional regulator4e-0754.7
NC_019908:2401577:243993424399342440371438Brachyspira pilosicoli P43/6/78 chromosome, complete genometranscriptional regulator4e-0754.7
NC_013131:2517861:253429125342912534746456Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, MarR family2e-0755.5
NC_013131:4356247:436059143605914361568978Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, MarR family4e-0651.2
NC_007963:317291:320986320986321489504Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, MarR family3e-0652
NC_010407:3132683:313516031351603135693534Clavibacter michiganensis subsp. sepedonicus chromosome, completeMarR family transcriptional regulator5e-1167.8
NC_013446:3147202:317523031752303175832603Comamonas testosteroni CNB-2, complete genometranscriptional regulator, MarR family1e-1170.1
NC_010002:4038500:406192540619254062380456Delftia acidovorans SPH-1, complete genometranscriptional regulator, MarR family6e-0753.9
NC_015563:3511951:351635735163573516893537Delftia sp. Cs1-4 chromosome, complete genomeMarR family transcriptional regulator8e-1270.5
NC_016584:2244966:226869022686902269115426Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator2e-1065.9
NC_015589:3085442:309538330953833095811429Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein MarR1e-0860.1
NC_015589:3340500:334601633460163346435420Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein MarR3e-0651.6
NC_008278:613329:613691613691614164474Frankia alni ACN14a, complete genomeputative MarR-family transcriptional regulator1e-0756.6
NC_009921:4757148:477444347744434774919477Frankia sp. EAN1pec, complete genometranscriptional regulator, MarR family1e-0756.6
NC_009654:91096:107555107555107980426Marinomonas sp. MWYL1, complete genomeMarR family transcriptional regulator1e-0756.6
NC_014408:682689:685230685230685685456Methanothermobacter marburgensis str. Marburg chromosome, completetranscriptional regulator6e-1064.3
NC_011894:3319856:333587033358703336325456Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, MarR family1e-1479.3
NC_011894:901630:906050906050906502453Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, MarR family1e-1479.7
NC_010511:7553703:757121875712187571697480Methylobacterium sp. 4-46 chromosome, complete genomeMarR family transcriptional regulator2e-1169.3
NC_016935:1636278:172678517267851727288504Paenibacillus mucilaginosus 3016 chromosome, complete genomeMarR family transcriptional regulator2e-0755.5
NC_015690:1109335:115982311598231160200378Paenibacillus mucilaginosus KNP414 chromosome, complete genomeMarR family transcriptional regulator1e-0653.1
NC_014622:653599:671371671371671793423Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator6e-0754.3
NC_016641:2225779:224448922444892244911423Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator2e-0755.5
NC_013956:1810026:181352818135281813950423Pantoea ananatis LMG 20103 chromosome, complete genomeHosA5e-0754.3
NC_008609:2840249:285931128593112859796486Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, MarR family5e-1167.8
NC_010162:7571525:757587375758737576337465Sorangium cellulosum 'So ce 56', complete genomeMarR family transcriptional regulator1e-0756.6
NC_015976:2023540:205303420530342053465432Sphingobium sp. SYK-6, complete genomeMarR family transcriptional regulator1e-1273.2
NC_003888:32134:3761437614387681155Streptomyces coelicolor A3(2), complete genometranscriptional regulator2e-0652.8
NC_015172:951550:952788952788953225438Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, MarR family8e-0753.9
NC_013642:505518:506191506191506622432Thermotoga naphthophila RKU-10, complete genometranscriptional regulator, MarR family4e-0651.6
NC_011978:1812000:183226318322631832694432Thermotoga neapolitana DSM 4359, complete genomeTranscriptional regulator, MarR family5e-0651.2