Pre_GI: BLASTP Hits

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Query: NC_007951:3631772:3640179 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 3640179, End: 3640592, Length: 414

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010645:558974:573499573499573738240Bordetella avium 197N, complete genomehypothetical protein (partial)2e-1374.3
NC_008701:391216:401455401455401829375Pyrobaculum islandicum DSM 4184, complete genomeputative endoribonuclease L-PSP5e-1166.2
NC_010645:1341475:136079613607961361197402Bordetella avium 197N, complete genomeendoribonuclease5e-1166.2
NC_015589:7678:182061820618589384Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeendoribonuclease L-PSP1e-1065.5
NC_019974:3013338:302391930239193024308390Natronococcus occultus SP4, complete genomeendoribonuclease L-PSP, putative1e-1064.7
NC_007912:4661141:468365446836544684037384Saccharophagus degradans 2-40, complete genomePeptidase S1C, Do2e-1064.3
NC_008698:560529:563553563553563933381Thermofilum pendens Hrk 5, complete genomeputative endoribonuclease L-PSP2e-1064.3
NC_021182:401129:416427416427416807381Clostridium pasteurianum BC1, complete genomeendoribonuclease L-PSP, putative3e-1063.9
NC_016025:807226:829399829399829797399Candidatus Chloracidobacterium thermophilum B chromosome chromosomeendoribonuclease L-PSP6e-1062.8
NC_016885:809000:814549814549814929381Pyrobaculum oguniense TE7 chromosome, complete genomeendoribonuclease L-PSP9e-1062.4
NC_009614:3714770:372855137285513728928378Bacteroides vulgatus ATCC 8482 chromosome, complete genomeendoribonuclease L-PSP2e-0961.6
NC_008817:539349:556560556560556952393Prochlorococcus marinus str. MIT 9515, complete genomePutative translation initiation inhibitor, yjgF family1e-0961.6
NC_011661:1332309:135425513542551354632378Dictyoglomus turgidum DSM 6724, complete genomeendoribonuclease L-PSP2e-0961.2
NC_011297:1167615:117385711738571174234378Dictyoglomus thermophilum H-6-12, complete genomeendoribonuclease L-PSP2e-0960.8
NC_014632:113420:126595126595126978384Ilyobacter polytropus DSM 2926 chromosome, complete genomeendoribonuclease L-PSP2e-0960.8
NC_011126:129937:135039135039135419381Hydrogenobaculum sp. Y04AAS1, complete genomeendoribonuclease L-PSP3e-0960.5
NC_013016:571255:589884589884590273390Neisseria meningitidis alpha14 chromosome, complete genometranslation initiation inhibitor4e-0960.1
NC_008767:613394:634500634500634889390Neisseria meningitidis FAM18, complete genomehypothetical protein4e-0960.1
NC_010120:609323:631641631641632030390Neisseria meningitidis 053442, complete genomeribonuclease, putative4e-0960.1
NC_003112:673772:689773689773690162390Neisseria meningitidis MC58, complete genomeputative ribonuclease4e-0960.1
NC_017501:1680075:168249516824951682884390Neisseria meningitidis 8013, complete genomeputative endoribonuclease4e-0960.1
NC_017505:670919:691717691717692106390Neisseria meningitidis alpha710 chromosome, complete genomehypothetical protein4e-0960.1
NC_017513:618500:642487642487642876390Neisseria meningitidis G2136 chromosome, complete genomeendoribonuclease L-PSP4e-0960.1
NC_017514:1568591:156925115692511569640390Neisseria meningitidis M01-240149 chromosome, complete genomeendoribonuclease L-PSP4e-0960.1
NC_017516:1613762:161442216144221614811390Neisseria meningitidis H44/76 chromosome, complete genomeendoribonuclease L-PSP4e-0960.1
NC_017518:743955:765382765382765771390Neisseria meningitidis NZ-05/33 chromosome, complete genomeendoribonuclease L-PSP4e-0960.1
NC_003210:870587:882328882328882705378Listeria monocytogenes EGD-e, complete genomehypothetical protein6e-0959.7
NC_013766:906550:918309918309918686378Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein6e-0959.7
NC_013202:771161:807690807690808067378Halomicrobium mukohataei DSM 12286, complete genomeendoribonuclease L-PSP7e-0959.3
NC_013501:931418:931418931418931816399Rhodothermus marinus DSM 4252, complete genomeendoribonuclease L-PSP7e-0959.3
NC_015966:2337833:235673623567362357134399Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeendoribonuclease L-PSP7e-0959.3
NC_007577:503440:520657520657521049393Prochlorococcus marinus str. MIT 9312, complete genomeYjgF-like protein8e-0959.3
NC_009840:544816:562030562030562422393Prochlorococcus marinus str. MIT 9215, complete genomePutative translation initiation inhibitor, yjgF family9e-0958.9
NC_005072:508827:526041526041526433393Prochlorococcus marinus subsp. pastoris str. CCMP1986, completehypothetical protein9e-0958.9
NC_017515:1601954:160261416026141603003390Neisseria meningitidis M04-240196 chromosome, complete genomeendoribonuclease L-PSP8e-0958.9
NC_014532:3967463:398728439872843987673390Halomonas elongata DSM 2581, complete genomeK07567 TdcF protein1e-0858.5
NC_015666:1293500:129843212984321298812381Halopiger xanaduensis SH-6 chromosome, complete genomeendoribonuclease L-PSP1e-0858.5
NC_008816:518895:536095536095536487393Prochlorococcus marinus str. AS9601, complete genomePutative translation initiation inhibitor, yjgF family2e-0857.8
NC_014366:354000:370852370852371235384Gamma proteobacterium HdN1, complete genomePutative translation initiation inhibitor, yjgF family2e-0857.8
NC_010465:660207:668352668352668732381Yersinia pseudotuberculosis YPIII, complete genomeendoribonuclease L-PSP3e-0857.4
NC_006155:4062000:407068240706824071062381Yersinia pseudotuberculosis IP 32953, complete genomeputative translational inhibitor protein3e-0857.4
NC_010159:1071937:107785110778511078231381Yersinia pestis Angola, complete genomeputative endoribonuclease L-PSP3e-0857.4
NC_008150:3495851:350498335049833505363381Yersinia pestis Antiqua, complete genomeputative translational inhibitor protein3e-0857.4
NC_003143:675622:688077688077688457381Yersinia pestis CO92, complete genomeputative translational inhibitor protein3e-0857.4
NC_010634:4001154:401088840108884011268381Yersinia pseudotuberculosis PB1/+, complete genomeendoribonuclease L-PSP3e-0857.4
NC_004088:3923804:393208239320823932462381Yersinia pestis KIM, complete genomehypothetical protein3e-0857.4
NC_005810:3272765:328090632809063281286381Yersinia pestis biovar Microtus str. 91001, complete genomeputative translational inhibitor protein3e-0857.4
NC_008149:587689:599607599607599987381Yersinia pestis Nepal516, complete genometranslational inhibitor protein3e-0857.4
NC_009381:460358:470044470044470424381Yersinia pestis Pestoides F chromosome, complete genometranslational inhibitor protein3e-0857.4
NC_014029:729675:741586741586741966381Yersinia pestis Z176003 chromosome, complete genomeputative translational inhibitor protein3e-0857.4
NC_017154:671816:683738683738684118381Yersinia pestis D106004 chromosome, complete genomeputative translational inhibitor protein3e-0857.4
NC_017160:676249:685923685923686303381Yersinia pestis D182038 chromosome, complete genomeputative translational inhibitor protein3e-0857.4
NC_017265:3790750:379744437974443797824381Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative translational inhibitor protein3e-0857.4
NC_017517:703811:719695719695720084390Neisseria meningitidis M01-240355 chromosome, complete genomeendoribonuclease L-PSP3e-0857.4
NC_020291:795500:798015798015798389375Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeRutC family protein2e-0857.4
NC_009091:493302:510528510528510920393Prochlorococcus marinus str. MIT 9301, complete genomePutative translation initiation inhibitor, yjgF family2e-0857.4
NC_006526:1976779:200247620024762002922447Zymomonas mobilis subsp. mobilis ZM4, complete genometranslational inhibitor protein3e-0857
NC_013385:90331:993919939199813423Ammonifex degensii KC4, complete genomeendoribonuclease L-PSP4e-0856.6
NC_010674:615963:630362630362630736375Clostridium botulinum B str. Eklund 17B, complete genomeputative endoribonuclease L-PSP6e-0856.2
NC_009708:633054:641199641199641579381Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeendoribonuclease L-PSP6e-0856.2
NC_015557:114648:138504138504138884381Hydrogenobaculum sp. 3684 chromosome, complete genomeendoribonuclease L-PSP6e-0856.2
NC_015587:114684:138540138540138920381Hydrogenobaculum sp. SHO chromosome, complete genomeendoribonuclease L-PSP6e-0856.2
NC_020411:114683:138539138539138919381Hydrogenobaculum sp. HO, complete genomeendoribonuclease L-PSP6e-0856.2
NC_014364:2904443:290909329090932909467375Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeendoribonuclease L-PSP1e-0755.5
NC_013744:159861:178667178667179047381Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeendoribonuclease L-PSP1e-0755.5
NC_007576:435713:457772457772458158387Lactobacillus sakei subsp. sakei 23K, complete genomePutative single-stranded mRNA endoribonuclease1e-0755.5
NC_008319:1727686:173335017333501733754405Synechococcus sp. CC9311, complete genomeputative endoribonuclease L-PSP1e-0755.1
NC_010556:316996:321607321607321996390Exiguobacterium sibiricum 255-15, complete genomeendoribonuclease L-PSP2e-0754.7
NC_016860:4024000:404045640404564040836381Salmonella enterica subsp. enterica serovar Typhimurium strtranslation initiation inhibitor2e-0754.7
NC_005070:1486496:148833414883341488741408Synechococcus sp. WH 8102, complete genomeputative translation initiation inhibitor2e-0754.3
NC_009481:676478:688498688498688896399Synechococcus sp. WH 7803 chromosome, complete genomeputative translation initiation inhibitor3e-0753.9
NC_010170:2374852:237607623760762376462387Bordetella petrii, complete genomeputative translational inhibitor4e-0753.1
NC_014221:398636:411607411607411999393Truepera radiovictrix DSM 17093 chromosome, complete genomeendoribonuclease L-PSP5e-0753.1
NC_016791:1980844:200449120044912004871381Clostridium sp. BNL1100 chromosome, complete genomeendoribonuclease L-PSP5e-0753.1
NC_011979:2352961:238206923820692382455387Geobacter sp. FRC-32, complete genomeendoribonuclease L-PSP9e-0752.4
NC_007335:1820332:183710018371001837507408Prochlorococcus marinus str. NATL2A, complete genomeYjgF-like protein1e-0652
NC_015144:1526669:153075515307551531147393Weeksella virosa DSM 16922 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_014632:11925:310333103331416384Ilyobacter polytropus DSM 2926 chromosome, complete genomeendoribonuclease L-PSP1e-0652
NC_008819:541000:556964556964557371408Prochlorococcus marinus str. NATL1A, complete genomePutative translation initiation inhibitor, yjgF family1e-0651.6
NC_014836:2919508:383238324212381Desulfurispirillum indicum S5 chromosome, complete genomeendoribonuclease L-PSP2e-0651.6
NC_005042:513931:532072532072532470399Prochlorococcus marinus subsp. marinus str. CCMP1375, completePutative translation initiation inhibitor3e-0650.8
NC_017361:930280:930280930280930657378Helicobacter pylori SouthAfrica7 chromosome, complete genometranslation initiation inhibitor3e-0650.4
NC_015873:1411718:141171814117181412104387Megasphaera elsdenii DSM 20460, complete genomeputative endoribonuclease L-PSP8e-0649.3