Pre_GI: BLASTP Hits

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Query: NC_007951:2233676:2246939 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2246939, End: 2247205, Length: 267

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009076:3564500:360646236064623606719258Burkholderia pseudomallei 1106a chromosome I, complete sequencetranscriptional regulator, XRE family6e-23105
NC_007651:3064530:313900931390093139266258Burkholderia thailandensis E264 chromosome I, complete sequenceDNA-binding protein3e-22103
NC_007626:697926:712256712256712492237Magnetospirillum magneticum AMB-1, complete genomePredicted transcriptional regulator1e-1168.9
NC_005773:5310339:531147853114785311723246Pseudomonas syringae pv. phaseolicola 1448A, complete genomeDNA-binding protein4e-1063.5
NC_008687:965152:972058972058972303246Paracoccus denitrificans PD1222 chromosome 2, complete sequencehelix-turn-helix domain protein5e-1063.2
NC_007645:6500059:651111165111116511458348Hahella chejuensis KCTC 2396, complete genomepredicted transcriptional regulator2e-0961.2
NC_002678:763808:780697780697780948252Mesorhizobium loti MAFF303099, complete genomehypothetical protein2e-0961.2
NC_009428:807577:825669825669825926258Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomeXRE family transcriptional regulator9e-0958.9
NC_010338:1394550:140713514071351407392258Caulobacter sp. K31, complete genomehelix-turn-helix domain protein4e-0856.6
NC_016845:4498097:451513345151334515378246Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Xre family transcriptional regulator6e-0856.2
NC_004547:1062410:107453210745321074786255Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative regulatory protein8e-0855.8
NC_005126:3204980:320953832095383209798261Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0755.5
NC_014217:4550544:455986045598604560108249Starkeya novella DSM 506 chromosome, complete genomehelix-turn-helix domain protein2e-0755.1
NC_020541:1786500:179882317988231799110288Rhodanobacter sp. 2APBS1, complete genomeputative transcriptional regulator1e-0755.1
NC_014500:3097362:314063831406383140886249Dickeya dadantii 3937 chromosome, complete genomeDNA-binding protein2e-0754.7
NC_013131:8480384:850444485044448504677234Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, XRE family2e-0754.7
NC_020063:1051310:105768110576811057920240Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcription factor, MBF1 like protein3e-0753.9
NC_014323:4665610:467335646733564673646291Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein3e-0753.9
NC_020541:468584:485047485047485328282Rhodanobacter sp. 2APBS1, complete genomeHelix-turn-helix protein5e-0753.1
NC_007925:3933765:394934239493423949620279Rhodopseudomonas palustris BisB18, complete genometranscriptional regulator, XRE family7e-0752.8
NC_012962:4942000:494316649431664943414249Photorhabdus asymbiotica, complete genomehypothetical protein7e-0752.8
NC_014034:1330843:134702813470281347285258Rhodobacter capsulatus SB1003 chromosome, complete genomeXRE family transcriptional regulator1e-0652
NC_017249:8510121:854866085486608548896237Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-0652
NC_004463:1717890:174528617452861745522237Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein1e-0652
NC_004547:1062410:107419910741991074447249Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative regulatory protein2e-0651.2