Pre_GI: BLASTP Hits

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Query: NC_007951:1971584:1983139 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1983139, End: 1984071, Length: 933

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010676:2793237:280280828028082803740933Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, LysR family7e-117420
NC_010524:933191:943524943524944378855Leptothrix cholodnii SP-6, complete genometranscriptional regulator, LysR family7e-75280
NC_015136:2282488:231933023193302320274945Burkholderia sp. CCGE1001 chromosome 1, complete sequenceLysR family transcriptional regulator ArgP9e-72270
NC_010623:72500:763497634977254906Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, LysR family1e-71270
NC_015136:2282488:228305222830522283975924Burkholderia sp. CCGE1001 chromosome 1, complete sequenceLysR family transcriptional regulator ArgP1e-71270
NC_008740:1484531:151373115137311514603873Marinobacter aquaeolei VT8, complete genometranscriptional regulator, LysR family2e-45182
NC_012917:2362725:238420523842052385104900Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, ArgP, LysR family9e-45180
NC_010943:1426885:145597214559721456868897Stenotrophomonas maltophilia K279a, complete genomeputative LysR family TRANSCRIPTIONAL REGULATORY PROTEIN2e-43176
NC_003902:3514000:351545935154593516376918Xanthomonas campestris pv. campestris str. ATCC 33913, completechromosome replication initiation inhibitor protein3e-43175
NC_015947:1290614:131205113120511312944894Burkholderia sp. JV3 chromosome, complete genomeLysR family transcriptional regulator ArgP5e-43174
NC_012668:83641:106939106939107835897Vibrio cholerae MJ-1236 chromosome 1, complete sequencechromosome replication initiation inhibitor protein2e-41169
NC_010524:1005355:100965410096541010589936Leptothrix cholodnii SP-6, complete genometranscriptional regulator, LysR family2e-41169
NC_009075:15017:431024310243995894Burkholderia pseudomallei 668 chromosome II, complete sequenceTranscriptional regulator3e-38159
NC_015563:4414854:443300544330054433910906Delftia sp. Cs1-4 chromosome, complete genometranscriptional regulator ArgP6e-38158
NC_015224:889536:902624902624903517894Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,chromosome replication initiation inhibitor protein2e-37155
NC_009937:4350132:435642343564234357316894Azorhizobium caulinodans ORS 571, complete genometranscriptional regulator5e-35148
NC_009654:3980289:398028939802893981167879Marinomonas sp. MWYL1, complete genomeLysR family transcriptional regulator3e-34145
NC_015953:2603526:260352626035262604431906Streptomyces sp. SirexAA-E chromosome, complete genomeLysR family transcriptional regulator2e-33143
NC_014550:7560:177491774918633885Arthrobacter arilaitensis Re117, complete genomelysine export transcriptional regulatory protein LysG6e-33141
NC_008253:334467:342718342718343605888Escherichia coli 536, complete genomeputative LysR-family transcriptional regulator4e-32139
NC_009480:2580429:258042925804292581325897Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative transcriptional regulator, LysR family5e-31135
NC_012803:2195808:223996322399632240838876Micrococcus luteus NCTC 2665, complete genometranscriptional regulator8e-28124
NC_012982:2415237:243643924364392437323885Hirschia baltica ATCC 49814, complete genometranscriptional regulator, ArgP, LysR family1e-24114
NC_015136:2282488:231816923181692318603435Burkholderia sp. CCGE1001 chromosome 1, complete sequencechromosome replication initiation inhibitor protein9e-1581.3
NC_015185:485866:506609506609507505897Desulfurobacterium thermolithotrophum DSM 11699 chromosome,transcriptional regulator, LysR family1e-1273.9
NC_005363:3562205:359199735919973592869873Bdellovibrio bacteriovorus HD100, complete genomeputative LysR-family transcriptional regulator2e-1273.6
NC_012997:3651993:366218636621863663103918Teredinibacter turnerae T7901, complete genometranscriptional regulator, LysR family2e-0756.6
NC_008322:2637646:264124826412482642132885Shewanella sp. MR-7, complete genometranscriptional regulator, LysR family2e-0756.6
NC_008321:2569315:257290825729082573792885Shewanella sp. MR-4, complete genometranscriptional regulator, LysR family2e-0756.6
NC_010172:798923:819931819931820854924Methylobacterium extorquens PA1, complete genomeLysR substrate-binding4e-0755.8
NC_017031:1328500:133730513373051338246942Corynebacterium pseudotuberculosis P54B96 chromosome, completeTranscriptional activator protein lysR4e-0755.8
NC_017301:1328500:133718613371861338127942Corynebacterium pseudotuberculosis C231 chromosome, completeTranscriptional activator protein lysR4e-0755.8
NC_017303:1328777:133732713373271338268942Corynebacterium pseudotuberculosis I19 chromosome, complete genomeTranscriptional activator protein lysR4e-0755.8
NC_017305:1326351:133489713348971335838942Corynebacterium pseudotuberculosis PAT10 chromosome, completeTranscriptional activator protein lysR4e-0755.8
NC_016932:1309644:132219213221921323133942Corynebacterium pseudotuberculosis 316 chromosome, complete genometranscriptional activator protein lysR4e-0755.8
NC_017300:1326331:133488013348801335821942Corynebacterium pseudotuberculosis 1002 chromosome, completeTranscriptional activator protein lysR4e-0755.5
NC_016781:1327516:133731813373181338259942Corynebacterium pseudotuberculosis 3/99-5 chromosome, completetranscriptional activator protein lysR4e-0755.5
NC_014329:1328949:133749813374981338439942Corynebacterium pseudotuberculosis FRC41 chromosome, completeLysR family transcriptional regulator4e-0755.5
NC_015379:908904:960029960029960925897Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, LysR family5e-0755.5
NC_016801:1422500:146943214694321470370939Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeLysR-family transcriptional regulator7e-0755.1
NC_018681:7692560:769446976944697695374906Nocardia brasiliensis ATCC 700358 chromosome, complete genomeLysR family transcriptional regulator6e-0755.1
NC_016788:1376000:142268514226851423623939Corynebacterium diphtheriae HC04 chromosome, complete genomeLysR family transcriptional regulator9e-0754.7
NC_016783:1397975:144823614482361449174939Corynebacterium diphtheriae INCA 402 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_016789:1432000:147314514731451474083939Corynebacterium diphtheriae PW8 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_016802:1317365:141243314124331413371939Corynebacterium diphtheriae HC02 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_016782:1385800:142764414276441428582939Corynebacterium diphtheriae 241 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_016785:1357500:140579614057961406734939Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_016786:1359064:142790914279091428847939Corynebacterium diphtheriae HC01 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_002935:1378566:143930114393011440239939Corynebacterium diphtheriae NCTC 13129, complete genomePutative transcriptional regulator8e-0754.7
NC_016787:1350676:141922014192201420158939Corynebacterium diphtheriae HC03 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_016790:1345638:139528813952881396226939Corynebacterium diphtheriae VA01 chromosome, complete genomeLysR family transcriptional regulator8e-0754.7
NC_016800:1411000:145578314557831456721939Corynebacterium diphtheriae BH8 chromosome, complete genomeLysR-family transcriptional regulator8e-0754.7
NC_017317:1463466:147206214720621473003942Corynebacterium ulcerans 809 chromosome, complete genomeLysR-family transcription regulator1e-0653.9
NC_015683:1467000:147576214757621476703942Corynebacterium ulcerans BR-AD22 chromosome, complete genomeLysR family transcription regulator1e-0653.9
NC_015379:4282815:428725542872554288142888Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, LysR family1e-0653.9
NC_019673:1420198:143785814378581438763906Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, LysR family2e-0653.1
NC_003295:659837:662013662013662882870Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSCRIPTION REGULATOR PROTEIN3e-0652.8
NC_014837:3633378:363507236350723636025954Pantoea sp. At-9b chromosome, complete genomeLysR family transcriptional regulator3e-0652.8
NC_013947:5546315:555147455514745552424951Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, LysR family4e-0652.4
NC_002678:6061448:607659160765916077493903Mesorhizobium loti MAFF303099, complete genometranscriptional regulator4e-0652.4
NC_016799:1439000:147945214794521480390939Corynebacterium diphtheriae 31A chromosome, complete genomeLysR family transcriptional regulator4e-0652.4
NC_014966:1668822:167179616717961672716921Vibrio vulnificus MO6-24/O chromosome II, complete sequenceLysR family transcripitonal regulator4e-0652.4
NC_012214:1:216972169722578882Erwinia pyrifoliae Ep1/96, complete genomeHTH-type transcriptional regulator BudR (Bud operon transcriptional regulator)6e-0652
NC_002937:1395977:140751514075151408441927Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetranscriptional regulator, LysR family8e-0651.2