Pre_GI: BLASTP Hits

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Query: NC_007951:1971584:1981587 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1981587, End: 1982240, Length: 654

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013592:3212834:322461232246123225190579Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family2e-46185
NC_013510:747042:752605752605753234630Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, TetR family3e-1685.5
NC_015957:8569721:858773485877348588399666Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR2e-1479
NC_021177:2185898:220127722012772201948672Streptomyces fulvissimus DSM 40593, complete genomeTetR-family transcriptional regulator4e-1478.2
NC_016027:346768:353003353003353650648Gluconacetobacter xylinus NBRC 3288, complete genometranscriptional regulator3e-1375.1
NC_013947:6221877:622483562248356225428594Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family1e-1170.1
NC_021177:2034722:203742520374252038024600Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator3e-1168.6
NC_016582:4983222:499773149977314998288558Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator7e-1167.4
NC_013929:7117326:711959371195937120255663Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator1e-1066.2
NC_015064:1355065:135624413562441356900657Acidobacterium sp. MP5ACTX9 chromosome, complete genomeregulatory protein TetR3e-1065.5
NC_016948:2931285:296748729674872968077591Mycobacterium intracellulare MOTT-64 chromosome, complete genometranscriptional regulator4e-1065.1
NC_018581:1718023:172428917242891724921633Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator5e-1064.7
NC_009142:3943829:394514339451433945880738Saccharopolyspora erythraea NRRL 2338, complete genomeTetR-family transcriptional regulator3e-0962
NC_010397:235976:251072251072251665594Mycobacterium abscessus chromosome Chromosome, complete sequencePutative regulatory protein, TetR family3e-0962
NC_018581:1718023:172232617223261722994669Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator4e-0961.6
NC_013521:1619394:163963316396331640235603Sanguibacter keddieii DSM 10542, complete genometranscriptional regulator, tetR family4e-0961.2
NC_015656:3300747:330382733038273304501675Frankia symbiont of Datisca glomerata chromosome, complete genomeregulatory protein TetR5e-0961.2
NC_014210:5309121:531332753133275313944618Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family4e-0858.2
NC_014152:927969:945497945497946150654Thermincola sp. JR, complete genometranscriptional regulator, TetR family8e-0857
NC_015588:95697:101094101094101801708Isoptericola variabilis 225 chromosome, complete genomeregulatory protein TetR1e-0756.6
NC_007947:290864:305887305887306441555Methylobacillus flagellatus KT, complete genometranscriptional regulator, TetR family3e-0755.5
NC_015953:2059083:207438220743822075047666Streptomyces sp. SirexAA-E chromosome, complete genomeTetR family transcriptional regulator3e-0755.1
NC_015589:3340500:335968733596873360313627Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR6e-0754.3
NC_018750:6869675:688342368834236884253831Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family8e-0753.9
NC_016114:7282882:728438972843897285000612Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeregulatory protein TetR9e-0753.5
NC_018750:4688968:469072446907244691359636Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family1e-0653.1
NC_008595:2687245:269486726948672695457591Mycobacterium avium 104, complete genometranscriptional regulator1e-0653.1
NC_002928:507749:515731515731516354624Bordetella parapertussis 12822, complete genomeputative TetR-family transcriptional regulator2e-0652.8
NC_021177:2139838:214324921432492143950702Streptomyces fulvissimus DSM 40593, complete genomeTetR-family regulatory protein2e-0652.8
NC_015738:1971211:198791219879121988565654Eggerthella sp. YY7918, complete genomehypothetical protein3e-0652.4
NC_002927:506183:514187514187514810624Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator3e-0652
NC_009328:3241166:326696632669663267598633Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_016947:666627:677018677018677569552Mycobacterium intracellulare MOTT-02 chromosome, complete genomeputative regulatory protein4e-0651.6
NC_008595:2546696:258079325807932581404612Mycobacterium avium 104, complete genometranscriptional regulator, TetR family protein5e-0651.2
NC_015953:46732:673036730367899597Streptomyces sp. SirexAA-E chromosome, complete genomeTetR family transcriptional regulator8e-0650.4