Pre_GI: BLASTN Hits

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Query: NC_007793:2618195 Staphylococcus aureus subsp. aureus USA300, complete genome

Start: 2618195, End: 2636099, Length: 17905

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: USA300, a methicillin resistant strain of Staphylococcus aureus, has been implicated in epidemiologically unassociated outbreaks of skin and soft tissue infections among healthy individuals in at least 21 U.S. states, Canada and Europe. USA300 is also noted for its strong association with unusually invasive disease, including severe septicemia, necrotizing pneumonia and necrotizing fasciitis. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010079:26183452618345263944421100Staphylococcus aureus subsp. aureus USA300_TCH1516, complete017550BLASTN svgBLASTP svg
NC_007795:25619282561928258863926712Staphylococcus aureus subsp. aureus NCTC 8325, complete genome017510BLASTN svgBLASTP svg
NC_002951:25545112554511257669622186Staphylococcus aureus subsp. aureus COL, complete genome017510BLASTN svgBLASTP svg
NC_002758:26280002628000264725819259Staphylococcus aureus subsp. aureus Mu50, complete genome07410BLASTN svgBLASTP svg
NC_009782:26278842627884264707019187Staphylococcus aureus subsp. aureus Mu3, complete genome07396BLASTN svgBLASTP svg
NC_003923:25619532561953258719925247Staphylococcus aureus subsp. aureus MW2, complete genome06839BLASTN svgBLASTP svg
NC_002953:25412642541264256306121798Staphylococcus aureus subsp. aureus MSSA476, complete genome06839BLASTN svgBLASTP svg
NC_002745:25531382553138257683223695Staphylococcus aureus subsp. aureus N315, complete genome06784BLASTN svgBLASTP svg
NC_007622:25015622501562252460723046Staphylococcus aureus RF122, complete genome05269BLASTN svgBLASTP svg
NC_002952:26534822653482267706023579Staphylococcus aureus subsp. aureus MRSA252, complete genome05206BLASTN svgBLASTP svg
NC_004461:15647915647918151425036Staphylococcus epidermidis ATCC 12228, complete genome6e-22113BLASTN svgBLASTP svg
NC_002976:24348802434880246168326804Staphylococcus epidermidis RP62A, complete genome6e-22113BLASTN svgBLASTP svg
NC_002951:49535495357109921565Staphylococcus aureus subsp. aureus COL, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_006322:36281433628143365369825556Bacillus licheniformis ATCC 14580, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_006270:36279743627974365450026527Bacillus licheniformis ATCC 14580, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_007168:24153612415361243618320823Staphylococcus haemolyticus JCSC1435, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_000964:36580003658000368234824349Bacillus subtilis subsp. subtilis str. 168, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014976:16715941671594168974418151Bacillus subtilis BSn5 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020244:34904603490460351683026371Bacillus subtilis XF-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_019896:53650053650055942422925Bacillus subtilis subsp. subtilis str. BSP1 chromosome, complete2e-0661.9BLASTN svgBLASTP svg
NC_004722:48248184824818484796723150Bacillus cereus ATCC 14579, complete genome8e-0660BLASTN svgBLASTP svg
NC_005945:4670978*4670978469409923122Bacillus anthracis str. Sterne, complete genome8e-0660BLASTN svgBLASTP svg
NC_005957:46800894680089470346623378Bacillus thuringiensis serovar konkukian str. 97-27, complete8e-0660BLASTN svgBLASTP svg
NC_007530:46743354674335469287518541Bacillus anthracis str. 'Ames Ancestor', complete genome8e-0660BLASTN svgBLASTP svg
NC_008600:4687500*4687500471283725338Bacillus thuringiensis str. Al Hakam, complete genome8e-0660BLASTN svgBLASTP svg
NC_012472:4691251*4691251471607624826Bacillus cereus 03BB102, complete genome8e-0660BLASTN svgBLASTP svg
NC_012793:3275751*3275751330479129041Geobacillus sp. WCH70, complete genome8e-0660BLASTN svgBLASTP svg
NC_014335:4622500*4622500464527322774Bacillus cereus biovar anthracis str. CI chromosome, complete8e-0660BLASTN svgBLASTP svg
NC_003997:46742094674209469274918541Bacillus anthracis str. Ames, complete genome8e-0660BLASTN svgBLASTP svg