Pre_GI: BLASTP Hits

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Query: NC_007777:2964500:2964579 Frankia sp. CcI3, complete genome

Start: 2964579, End: 2966426, Length: 1848

Host Lineage: Frankia; Frankia; Frankiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Isolated from root nodules of Casuarina cunninghamiana in 1983 at Harvard Forest in Petersham, Massachusetts, USA. Nitrogen fixation.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013757:1888850:1904409190440919062141806Geodermatophilus obscurus DSM 43160, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family1e-115417
NC_008268:7180663:7202221720222172040471827Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator3e-62239
NC_015312:681678:6857296857296876391911Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeGAF modulated sigma54 specific Fis family transcriptional regulator7e-60232
NC_014830:335380:3610653610653628341770Intrasporangium calvum DSM 43043 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family1e-55218
NC_016943:1314500:1339114133911413409191806Blastococcus saxobsidens DD2, complete genomeputative Fis family transcriptional regulator6e-55215
NC_008271:35909:4751547515493921878Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprobable transcriptional regulator1e-53211
NC_007777:2964500:2982679298267929844421764Frankia sp. CcI3, complete genomediguanylate cyclase (GGDEF domain)2e-22107
NC_014034:1418681:1435179143517914369721794Rhodobacter capsulatus SB1003 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family1e-20101
NC_014220:1732254:1740787174078717428532067Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomesigma54 specific transcriptional regulator, Fis family3e-20100
NC_014206:2971304:2974878297487829768091932Geobacillus sp. C56-T3 chromosome, complete genomeFis family GAF modulated sigma-54 specific transcriptional regulator3e-1997.4
NC_007777:2638580:2668112266811226697221611Frankia sp. CcI3, complete genomeputative transcriptional regulator, Fis family4e-1996.7
NC_014210:4188448:4191569419156941929871419Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,sigma54 specific transcriptional regulator, Fis family2e-1894.4
NC_010682:288415:3041113041113061742064Ralstonia pickettii 12J chromosome 1, complete sequenceGAF modulated sigma54 specific transcriptional regulator, Fis family2e-1791.3
NC_014098:1114076:1133359113335911352541896Bacillus tusciae DSM 2912 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family2e-1791.3
NC_015573:162000:1663901663901684712082Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeFis family PAS modulated sigma-54 specific transcriptional regulator1e-1689
NC_017295:3472797:3490874349087434922111338Clostridium acetobutylicum EA 2018 chromosome, complete genomeSignal transduction histidine kinase2e-1687.8
NC_009937:3324793:3342477334247733444201944Azorhizobium caulinodans ORS 571, complete genomesigma54 specific transcriptional regulator1e-1585.5
NC_011761:1499500:1506248150624815080771830Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completesigma-54 dependent transcriptional regulator1e-1585.1
NC_009959:55567:1936193636841749Dinoroseobacter shibae DFL 12 plasmid pDSHI05, complete sequenceFis family GAF modulated sigma54 specific transcriptional regulator6e-1582.8
NC_014098:1114076:1123982112398211259551974Bacillus tusciae DSM 2912 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family1e-1482
NC_021184:2936244:2960665296066529626471983Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional activator of acetoin/glycerol metabolism2e-1481.3
NC_014098:1553900:1571416157141615734552040Bacillus tusciae DSM 2912 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family6e-1479.7
NC_016584:4478200:4494340449434044963011962Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional activator of acetoin/glycerol metabolism9e-1479
NC_015379:2751342:2757021275702127590121992Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, Fis family2e-1378.2
NC_015422:3513689:3560112356011235620941983Alicycliphilus denitrificans K601 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator9e-1375.9
NC_018870:1953748:1969744196974419717622019Thermacetogenium phaeum DSM 12270 chromosome, complete genomesigma54 specific transcriptional regulator1e-1275.5
NC_016845:4077293:4099713409971341015001788Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative Fis-type transcriptional regulator2e-1274.3
NC_008826:539835:5619935619935639871995Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencesigma-54 dependent transcriptional activator9e-1272.4
NC_014377:2033781:2044106204410620460701965Thermosediminibacter oceani DSM 16646 chromosome, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family2e-1171.6
NC_015957:3282183:3300885330088533023031419Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative phytochrome sensor protein2e-1171.2
NC_014220:2102000:2114839211483921167971959Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomePAS modulated sigma54 specific transcriptional regulator, Fis family3e-1170.9
NC_009495:1759759:1765651176565117676031953Clostridium botulinum A str. ATCC 3502 chromosome, complete genomesignal-transduction and transcriptional-control protein3e-1170.9
NC_021171:2697398:2708227270822727102452019Bacillus sp. 1NLA3E, complete genometranscriptional activator of acetoin/glycerol metabolism3e-1170.9
NC_008593:2020473:2034360203436020363391980Clostridium novyi NT, complete genomeaco operon expression regulatory protein4e-1170.1
NC_011830:633195:6453066453066473692064Desulfitobacterium hafniense DCB-2, complete genomesigma54 specific transcriptional regulator, Fis family5e-1170.1
NC_021184:3841172:3871315387131538733152001Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional activator of acetoin/glycerol metabolism6e-1169.7
NC_008554:4586543:4606428460642846078191392Syntrophobacter fumaroxidans MPOB, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family7e-1169.7
NC_015589:3556197:3556197355619735582122016Desulfotomaculum ruminis DSM 2154 chromosome, complete genomePAS sensor protein8e-1169.3
NC_016584:3040887:3055879305587930579782100Desulfosporosinus orientis DSM 765 chromosome, complete genomePAS domain-containing protein1e-1068.9
NC_008269:868000:894988894988895455468Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable transcriptional regulator1e-1068.6
NC_009142:2565561:2580921258092125822731353Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator2e-1068.2
NC_008782:1917634:1920037192003719220402004Acidovorax sp. JS42, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family2e-1068.2
NC_012792:962292:9848279848279869532127Variovorax paradoxus S110 chromosome 2, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family2e-1068.2
NC_015573:2900906:2926688292668829286701983Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeGAF modulated Fis family sigma54 specific transcriptional regulator4e-1067
NC_018870:115982:1286931286931308042112Thermacetogenium phaeum DSM 12270 chromosome, complete genomesigma54 specific transcriptional regulator5e-1066.6
NC_013235:1938889:1951014195101419523961383Nakamurella multipartita DSM 44233, complete genomeputative phytochrome sensor protein6e-1066.2
NC_007503:1383255:1383255138325513854532199Carboxydothermus hydrogenoformans Z-2901, complete genomesigma-54 dependent transcriptional regulator8e-1065.9
NC_017191:754453:7776957776957795031809Bacillus amyloliquefaciens XH7 chromosome, complete genometranscriptional regulator1e-0965.9
NC_017190:794820:8180628180628198701809Bacillus amyloliquefaciens LL3 chromosome, complete genometranscriptional activator of the acoA-acoB-acoC-acoL operon1e-0965.9
NC_017188:753039:7762817762817780891809Bacillus amyloliquefaciens TA208 chromosome, complete genometranscriptional activator of the acoA-acoB-acoC-acoL operon1e-0965.9
NC_014551:809025:8322718322718340791809Bacillus amyloliquefaciens DSM 7, complete genometranscriptional activator of the ''acoA-acoB-acoC-acoL'' operon1e-0965.9
NC_008095:8698766:8721562872156287229951434Myxococcus xanthus DK 1622, complete genomesigma-54 dependent DNA-binding response regulator1e-0965.5
NC_010723:622928:6289516289516309061956Clostridium botulinum E3 str. Alaska E43, complete genomesignal-transduction and transcriptional-control protein2e-0965.1
NC_014220:481923:4950774950774968041728Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomePAS modulated sigma54 specific transcriptional regulator, Fis family2e-0965.1
NC_017270:1755552:1793339179333917950991761Vibrio cholerae LMA3984-4 chromosome chromosome I, completeSigma-54 dependent transcriptional regulator1e-0965.1
NC_010674:658596:6637586637586657131956Clostridium botulinum B str. Eklund 17B, complete genomeaco operon expression regulatory protein2e-0964.7
NC_012668:1688500:1688543168854316903061764Vibrio cholerae MJ-1236 chromosome 1, complete sequencesigma-54 dependent transcriptional regulator2e-0964.7
NC_014328:2643588:2646788264678826487161929Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative sigma-54-interacting transcriptional regulator2e-0964.7
NC_007517:2241104:2277374227737422787231350Geobacter metallireducens GS-15, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family4e-0963.9
NC_020210:2044944:2064037206403720654071371Geobacillus sp. GHH01, complete genomesignal-transduction and transcriptional-control protein3e-0963.9
NC_020291:2291418:2294109229410922958331725Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomePAS domain-containing S-box protein3e-0963.9
NC_011296:102650:1258441258441272111368Thermodesulfovibrio yellowstonii DSM 11347, complete genomeacetoacetate metabolism regulatory protein AtoC4e-0963.5
NC_009439:4404942:4428423442842344298831461Pseudomonas mendocina ymp, complete genomesigma-54 dependent trancsriptional regulator5e-0963.5
NC_013722:3081459:3081459308145930827961338Xanthomonas albilineans, complete genomeprobable two component system regulatory protein, sigma 54-dependent5e-0963.2
NC_006510:1995916:1995916199591619976851770Geobacillus kaustophilus HTA426, complete genometranscriptional regulator1e-0862.4
NC_017075:1233377:1233377123337712352091833Rubrivivax gelatinosus IL144, complete genomesigma54-dependent DNA-binding transcriptional regulator1e-0862.4
NC_013939:724469:7407637407637420551293Deferribacter desulfuricans SSM1, complete genometwo-component system, NtrC family, response regulator AtoC1e-0862
NC_014206:1618988:1641271164127116429801710Geobacillus sp. C56-T3 chromosome, complete genomeFis family PAS modulated sigma-54 specific transcriptional regulator2e-0861.2
NC_018870:115982:1656631656631676181956Thermacetogenium phaeum DSM 12270 chromosome, complete genomesigma54 specific transcriptional regulator2e-0861.2
NC_014355:220002:2386072386072404031797Candidatus Nitrospira defluvii, complete genomesigma-54 dependent response regulator3e-0860.8
UCMB5137:409500:4323014323014341121812Bacillus atrophaeus UCMB-5137transcriptional regulator3e-0860.8
NC_008781:654289:6563736563736583341962Polaromonas naphthalenivorans CJ2, complete genomeGAF modulated sigma54 specific transcriptional regulator, Fis family4e-0860.1
NC_016584:3040887:3058001305800130601242124Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains5e-0860.1
NC_006347:143876:1438761438761451981323Bacteroides fragilis YCH46, complete genomerteB gene product6e-0860.1
NC_011979:589874:6055916055916069551365Geobacter sp. FRC-32, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family7e-0859.7
NC_007508:237771:2728612728612742041344Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomesigma 54-dependent response regulator7e-0859.3
NC_015945:218326:2202842202842216121329Muricauda ruestringensis DSM 13258 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator7e-0859.3
NC_010814:903199:9201539201539217841632Geobacter lovleyi SZ, complete genomeputative sigma54 specific transcriptional regulator8e-0859.3
NC_015850:510837:5298755298755312751401Acidithiobacillus caldus SM-1 chromosome, complete genomeFis family sigma-54 specific transcriptional regulator3e-0757.4
NC_010520:2171584:2180905218090521828001896Clostridium botulinum A3 str. Loch Maree, complete genomeaor transcriptional regulator3e-0757.4
NC_012918:2850755:2849394284939428507581365Geobacter sp. M21 chromosome, complete genomeFis family transcriptional regulator3e-0757.4
NC_018643:1309804:1324444132444413255321089Alpha proteobacterium HIMB5 chromosome, complete genomeDNA-binding protein with resolvase-like helix-turn-helix domain protein4e-0757
NC_021150:4929670:4961725496172549633381614Azotobacter vinelandii CA6, complete genomesigma54-dependent transcriptional activator for the iron only nitrogenase, AnfA6e-0756.6
NC_012560:4929683:4961738496173849633511614Azotobacter vinelandii DJ, complete genomesigma54-dependent transcriptional activator for the iron only nitrogenase, AnfA6e-0756.6
NC_009698:1985404:1992181199218119940761896Clostridium botulinum A str. Hall chromosome, complete genomeaor transcriptional regulator6e-0756.6
NC_009697:1985187:1991964199196419938591896Clostridium botulinum A str. ATCC 19397 chromosome, completeaor transcriptional regulator6e-0756.6
NC_009495:2056546:2063323206332320652181896Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeaor transcriptional regulator6e-0756.6
NC_012563:2203037:2209814220981422117091896Clostridium botulinum A2 str. Kyoto, complete genomeaor transcriptional regulator6e-0756.6
NC_010741:546573:5605975605975619731377Treponema pallidum subsp. pallidum SS14, complete genomeresponse regulatory protein5e-0756.6
NC_000919:545141:5591655591655605411377Treponema pallidum subsp. pallidum str. Nichols, complete genomeresponse regulatory protein (atoC)5e-0756.6
NC_016842:546661:5606855606855620611377Treponema pallidum subsp. pertenue str. SamoaD chromosome, completesigma-54 dependent response regulator5e-0756.6
NC_016843:547149:5611735611735625491377Treponema pallidum subsp. pertenue str. Gauthier chromosome,sigma-54 dependent response regulator5e-0756.6
NC_016844:547069:5610935610935624691377Treponema pallidum subsp. pallidum DAL-1 chromosome, completesigma-54 dependent response regulator5e-0756.6
NC_016848:547115:5611395611395625151377Treponema pallidum subsp. pertenue str. CDC2 chromosome, completesigma-54 dependent response regulator5e-0756.6
NC_017268:546376:5604005604005617761377Treponema pallidum subsp. pallidum str. Chicago chromosome,acetoacetate metabolism regulatory protein AtoC5e-0756.6
NC_021508:546592:5606165606165619921377Treponema pallidum subsp. pallidum SS14, complete genomesigma-54 dependent response regulator5e-0756.6
NC_014836:993448:1014670101467010160551386Desulfurispirillum indicum S5 chromosome, complete genomesigma-54 factor interaction domain-containing protein7e-0756.2
NC_014972:2503107:2515974251597425183792406Desulfobulbus propionicus DSM 2032 chromosome, complete genomePAS modulated Fis family sigma-54 specific transcriptional regulator6e-0756.2
NC_010516:2064027:2071399207139920732941896Clostridium botulinum B1 str. Okra, complete genomeaor transcriptional regulator6e-0756.2
NC_009699:2116500:2121467212146721233621896Clostridium botulinum F str. Langeland chromosome, complete genomeaor transcriptional regulator6e-0756.2
NC_011769:787496:8097648097648111251362Desulfovibrio vulgaris str. 'Miyazaki F', complete genometwo component, sigma54 specific, transcriptional regulator, Fis family8e-0755.8
NC_016610:1310275:1335271133527113365931323Tannerella forsythia ATCC 43037 chromosome, complete genomeSigma-54 interaction domain-containing protein9e-0755.8
NC_014972:409884:4278214278214297041884Desulfobulbus propionicus DSM 2032 chromosome, complete genomeFis family sigma-54 specific transcriptional regulator1e-0655.8
NC_017297:2114222:2122424212242421234641041Clostridium botulinum F str. 230613 chromosome, complete genome1e-0655.8
NC_013960:841181:8550258550258563621338Nitrosococcus halophilus Nc4 chromosome, complete genomesigma-54 factor interaction domain-containing protein1e-0655.5
NC_008593:2136759:2153232215323221551271896Clostridium novyi NT, complete genomeSignal-transduction and transcriptional-control protein1e-0655.5
NC_016745:1892500:1908042190804219097361695Oceanimonas sp. GK1 chromosome, complete genomeacetoin catabolism regulatory protein1e-0655.5
NC_015164:2935363:2958485295848529598071323Bacteroides salanitronis DSM 18170 chromosome, complete genometwo component, sigma54 specific, transcriptional regulator, Fis family2e-0655.1
NC_014931:6203872:6228445622844562297071263Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, Fis family2e-0655.1
NC_007512:1539095:1540713154071315420021290Pelodictyon luteolum DSM 273, complete genomeputative transcriptional regulator, Fis family2e-0654.7
NC_014365:3123853:3147082314708231488091728Desulfarculus baarsii DSM 2075 chromosome, complete genomePAS modulated sigma54 specific transcriptional regulator, Fis family2e-0654.7
NC_012214:1650523:1650523165052316524541932Erwinia pyrifoliae Ep1/96, complete genometranscriptional regulator2e-0654.3
NC_015850:761500:7935407935407948951356Acidithiobacillus caldus SM-1 chromosome, complete genomePAS modulated Fis family sigma-54 specific transcriptional regulator3e-0653.9
NC_015850:1497998:1520348152034815216911344Acidithiobacillus caldus SM-1 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator5e-0653.5
NC_013440:1408689:1427949142794914294301482Haliangium ochraceum DSM 14365, complete genomesigma54 specific transcriptional regulator, Fis family5e-0653.5
NC_015740:3486226:3486226348622634877251500Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetranscriptional regulator6e-0653.1
NC_015711:570910:5960145960145974231410Myxococcus fulvus HW-1 chromosome, complete genomesigma-54 dependent DNA-binding response regulator SasR6e-0653.1
NC_015565:1281397:1281397128139712827611365Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completetwo component, sigma54 specific, Fis family transcriptional regulator8e-0652.8
NC_016830:2247789:2282479228247922843231845Pseudomonas fluorescens F113 chromosome, complete genomesigma-54 dependent transcriptional regulator1e-0552.4