Pre_GI: BLASTP Hits

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Query: NC_007613:761234:778006 Shigella boydii Sb227, complete genome

Start: 778006, End: 778470, Length: 465

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011205:2938356:293835629383562938820465Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage head completion protein5e-87318
NC_011149:2802199:280311128031112803575465Salmonella enterica subsp. enterica serovar Agona str. SL483,phage head completion protein2e-86317
NC_016845:1773416:179034217903421790806465Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,Head completion/stabilization protein (GpL)3e-86316
NC_017046:2869873:286987328698732870400528Salmonella enterica subsp. enterica serovar Typhimurium str. 798capsid completion protein3e-79293
NC_006511:2677964:267816726781672678631465Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative capsid completion protein4e-79292
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-79292
NC_003198:4453457:448993244899324490396465Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative capsid completion protein9e-79291
NC_010694:614985:642066642066642593528Erwinia tasmaniensis, complete genomePutative capsid completion protein3e-77286
NC_014837:3766426:376786637678663768330465Pantoea sp. At-9b chromosome, complete genomehead completion protein8e-61232
NC_014562:2871765:287347528734752873939465Pantoea vagans C9-1 chromosome, complete genomeHead completion/stabilization protein (GpL)4e-60229
NC_014306:1244721:126265712626571263127471Erwinia billingiae Eb661, complete genomecapsid completion protein1e-58224
NC_013956:3525711:352571135257113526196486Pantoea ananatis LMG 20103 chromosome, complete genomeL2e-55213
NC_020260:312805:334068334068334535468Cronobacter sakazakii Sp291, complete genomecapsid completion protein2e-49194
NC_020211:4598217:459912845991284599616489Serratia marcescens WW4, complete genomephage head completion protein GpL4e-34143
NC_016514:2334870:233487023348702335376507Enterobacter cloacae EcWSU1 chromosome, complete genomehead Completion protein6e-33139
NC_014228:3022903:304245930424593042923465Xenorhabdus nematophila ATCC 19061, complete genomeHead completion/stabilization protein (GpL)5e-32136
NC_015061:1598920:162158416215841622054471Rahnella sp. Y9602 chromosome, complete genomehead completion protein1e-30131
NC_013282:3389619:339052733905273391021495Cronobacter turicensis, complete genomeHead completion/stabilization protein7e-30129
NC_009648:3803622:382045438204543820960507Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage phage head completion protein3e-29127
NC_015856:1152021:117125811712581171749492Collimonas fungivorans Ter331 chromosome, complete genomephage head completion2e-27121
NC_017047:4037674:405854540585454059018474Rahnella aquatilis HX2 chromosome, complete genomehead completion protein4e-27120
NC_017047:1551836:157227515722751572769495Rahnella aquatilis HX2 chromosome, complete genomehead completion protein9e-27119
NC_012962:4942000:495121549512154951679465Photorhabdus asymbiotica, complete genomeputative capsid completion protein2e-26117
NC_003902:3514000:353468835346883535155468Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related capsid completion protein8e-26115
NC_016818:1605918:162552616255261626020495Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePhage head completion protein (GPL)1e-25115
NC_012724:147454:148018148018148497480Burkholderia glumae BGR1 chromosome 1, complete genomeFels-2 prophage protein3e-24110
NC_020209:3262000:327931332793133279774462Pseudomonas poae RE*1-1-14, complete genomephage head completion protein (GPL)6e-23106
NC_007963:1582089:158345215834521583922471Chromohalobacter salexigens DSM 3043, complete genomephage head completion1e-22105
NC_014306:103545:124398124398124892495Erwinia billingiae Eb661, complete genomePhage head completion/stabilization protein1e-21102
NC_012724:1892000:190853019085301909030501Burkholderia glumae BGR1 chromosome 1, complete genomePhage head completion2e-1891.7
NC_017059:3688688:369313836931383693632495Rhodospirillum photometricum DSM 122, complete genomeHead completion protein1e-1375.5
NC_013892:992811:100135410013541001806453Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-0961.2
NC_013592:804288:832887832887833399513Dickeya dadantii Ech586, complete genomehead completion protein4e-0960.5
NC_014500:894136:932196932196932699504Dickeya dadantii 3937 chromosome, complete genomeputative head completion/stabilization protein5e-0960.1
NC_012125:894955:932481932481932969489Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-0857.8
NC_009656:5185704:520487252048725205333462Pseudomonas aeruginosa PA7 chromosome, complete genomephage head completion protein4e-0857