Pre_GI: BLASTP Hits

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Query: NC_007613:761234:777260 Shigella boydii Sb227, complete genome

Start: 777260, End: 777910, Length: 651

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016845:1773416:178959617895961790246651Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,terminase, endonuclease subunit8e-103372
NC_011205:2938356:293891629389162939566651Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853terminase, endonuclease subunit8e-103372
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-101367
NC_003198:4453457:449049044904904491140651Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage terminase2e-100364
NC_006511:2677964:267872526787252679375651Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative phage terminase2e-100364
NC_011149:2802199:280366928036692804319651Salmonella enterica subsp. enterica serovar Agona str. SL483,terminase, endonuclease subunit2e-99361
NC_016857:2871689:287168928716892872342654Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74terminase-like protein4e-98357
NC_016810:2871689:287168928716892872342654Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage terminase4e-98357
NC_014306:1244721:126190612619061262556651Erwinia billingiae Eb661, complete genomeTerminase, endonuclease subunit5e-83306
NC_017046:2869873:287043128704312870982552Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage terminase1e-80299
NC_013956:3525711:352629435262943526938645Pantoea ananatis LMG 20103 chromosome, complete genomeM1e-78292
NC_014837:3766426:376843037684303769080651Pantoea sp. At-9b chromosome, complete genomesmall terminase subunit6e-74276
NC_010694:614985:641390641390642031642Erwinia tasmaniensis, complete genomePutative phage terminase2e-71268
NC_020260:312805:333316333316333969654Cronobacter sakazakii Sp291, complete genomesmall terminase subunit5e-51200
NC_013282:3389619:339111733911173391863747Cronobacter turicensis, complete genomeTerminase, endonuclease subunit1e-42172
NC_012917:3565268:359057535905753591234660Pectobacterium carotovorum subsp. carotovorum PC1, complete genomesmall terminase subunit2e-42172
NC_020211:4598217:459971045997104600369660Serratia marcescens WW4, complete genomephage terminase, endonuclease subunit1e-40166
NC_007963:1582089:158403715840371584702666Chromohalobacter salexigens DSM 3043, complete genomephage small terminase subunit1e-37155
NC_017047:4037674:405779340577934058449657Rahnella aquatilis HX2 chromosome, complete genomesmall terminase subunit6e-37154
NC_009648:3803622:382105738210573821776720Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage small terminase subunit4e-36150
NC_015061:1598920:162083216208321621488657Rahnella sp. Y9602 chromosome, complete genomesmall terminase subunit1e-34145
NC_014562:1698253:171339117133911713963573Pantoea vagans C9-1 chromosome, complete genomeTerminase, endonuclease subunit (GpM)2e-34145
NC_012962:4942000:495176449517644952429666Photorhabdus asymbiotica, complete genomephage r protein [enterobacteria phage 186] gb|aac34151.1| (u32222)3e-33141
NC_012724:147454:148594148594149283690Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein4e-33141
NC_017047:1551836:157143315714331572179747Rahnella aquatilis HX2 chromosome, complete genomegpM7e-33140
NC_014228:3022903:304301130430113043673663Xenorhabdus nematophila ATCC 19061, complete genomeTerminase, endonuclease subunit (GpM)2e-32139
NC_016818:1605918:162468116246811625430750Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePhage small terminase subunit5e-32137
NC_014323:992978:992978992978993697720Herbaspirillum seropedicae SmR1 chromosome, complete genomebacteriophage-related terminase6e-32137
NC_015856:1152021:117044811704481171164717Collimonas fungivorans Ter331 chromosome, complete genomephage small terminase subunit6e-30130
NC_003902:3514000:353387035338703534589720Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related terminase5e-30130
NC_020209:3262000:327820232782023278921720Pseudomonas poae RE*1-1-14, complete genomephage P2 small terminase subunit gpM-like protein4e-28124
NC_017059:3688688:369236436923643693062699Rhodospirillum photometricum DSM 122, complete genomeSmall terminase subunit (Endonuclease subunit of bacteriophage terminase)5e-25114
NC_016514:2334870:233547623354762336027552Enterobacter cloacae EcWSU1 chromosome, complete genomeSmall Terminase Subunit5e-24110
NC_012724:1892000:190773519077351908433699Burkholderia glumae BGR1 chromosome 1, complete genomeGp1, phage terminase, endonuclease subunit7e-23107
NC_014306:103545:123350123350124300951Erwinia billingiae Eb661, complete genomePhage terminase/endonuclease subunit9e-23107
NC_008800:1870596:187059618705961871306711Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,phage terminase/endonuclease subunit1e-22106
NC_009656:5185704:520403752040375204774738Pseudomonas aeruginosa PA7 chromosome, complete genomeputative terminase, endonuclease subunit6e-0857.8
NC_013892:992811:100054610005461001253708Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-0756.2