Pre_GI: BLASTP Hits

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Query: NC_007613:761234:764178 Shigella boydii Sb227, complete genome

Start: 764178, End: 764399, Length: 222

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012947:2898179:290756029075602907781222Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-35147
NC_011601:846358:856797856797857018222Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeregulatory protein3e-35146
NC_009436:1466580:147827914782791478500222Enterobacter sp. 638, complete genomeregulator for prophage7e-30129
NC_013592:804288:822231822231822452222Dickeya dadantii Ech586, complete genomehypothetical protein8e-30129
NC_014500:894136:920173920173920394222Dickeya dadantii 3937 chromosome, complete genomehypothetical protein9e-30128
NC_015061:2770856:277926527792652779486222Rahnella sp. Y9602 chromosome, complete genomehypothetical protein6e-29125
NC_013956:3525711:354282235428223543106285Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-1581.3
NC_006155:2116834:212269421226942122891198Yersinia pseudotuberculosis IP 32953, complete genomeputative regulator for prophage CP-933T (Escherichia coli O157:H7)9e-0752.4
NC_012779:2127542:215341921534192153628210Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-0650.1