Pre_GI: BLASTP Hits

Some Help

Query: NC_007613:4217557:4244820 Shigella boydii Sb227, complete genome

Start: 4244820, End: 4245065, Length: 246

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:4821519:4834680483468048359031224Escherichia coli SMS-3-5, complete genomehypothetical protein5e-39159
NC_010658:4494103:4497457449745744994301974Shigella boydii CDC 3083-94, complete genome2e-37154
NC_000913:4462782:4477753447775344789491197Escherichia coli K12, complete genomeconserved inner membrane protein5e-34142
NC_010473:4564590:4579561457956145807571197Escherichia coli str. K-12 substr. DH10B, complete genomeconserved inner membrane protein5e-34142
AC_000091:4472000:4484410448441044856061197Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein5e-34142
NC_011742:4795733:4808951480895148101471197Escherichia coli S88 chromosome, complete genomehypothetical protein5e-34142
NC_012947:3947238:3950149395014939513451197Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-34142
NC_012967:4449576:4462763446276344639591197Escherichia coli B str. REL606 chromosome, complete genomeinner membrane protein4e-34142
NC_017047:4298207:4326185432618543273751191Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-1168.2
NC_015061:4203767:4232270423227042334601191Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-1168.2
NC_008149:318860:3351133351133363091197Yersinia pestis Nepal516, complete genomemembrane protein3e-1167
NC_004088:4202247:4203489420348942046851197Yersinia pestis KIM, complete genomehypothetical protein3e-1167
NC_008150:4373722:4374964437496443761601197Yersinia pestis Antiqua, complete genomehypothetical protein3e-1167
NC_005810:4306716:4307958430795843091541197Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-1167
NC_003143:398748:4159054159054171011197Yersinia pestis CO92, complete genomehypothetical protein3e-1167
NC_009381:3680638:3681902368190236830981197Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-1167
NC_014029:452248:4694054694054706011197Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-1167
NC_017154:394401:4115574115574127531197Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-1167
NC_017160:396600:4137574137574149531197Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-1167
NC_017168:687471:6887136887136899091197Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-1167
NC_017265:4065625:4066867406686740680631197Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,thymidylate kinase3e-1167
NC_017162:1228723:1228723122872312298111089Acinetobacter baumannii 1656-2 chromosome, complete genomehypothetical protein7e-1062.8
NC_009943:1364536:1365638136563813669061269Candidatus Desulfococcus oleovorans Hxd3, complete genomeprotein of unknown function DUF898 transmembrane3e-0857.4
NC_014311:2831620:2847093284709328481691077Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein3e-0753.9
NC_015138:765497:7865647865647878051242Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein5e-0753.1
NC_014307:2735934:2739762273976227408591098Ralstonia solanacearum CFBP2957 chromosome, complete genomehypothetical protein9e-0752.4
NC_011979:646518:6500336500336513311299Geobacter sp. FRC-32, complete genomeprotein of unknown function DUF898 transmembrane3e-0650.4
NC_011146:603429:6204976204976217231227Geobacter bemidjiensis Bem, complete genomeprotein of unknown function DUF898 transmembrane3e-0650.4