Pre_GI: BLASTP Hits

Some Help

Query: NC_007613:4217557:4240173 Shigella boydii Sb227, complete genome

Start: 4240173, End: 4241192, Length: 1020

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:4494103:4497457449745744994301974Shigella boydii CDC 3083-94, complete genome1e-138493
NC_012967:4449576:4462763446276344639591197Escherichia coli B str. REL606 chromosome, complete genomeinner membrane protein2e-135481
NC_012947:3947238:3950149395014939513451197Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-135481
NC_011742:4795733:4808951480895148101471197Escherichia coli S88 chromosome, complete genomehypothetical protein3e-134478
NC_000913:4462782:4477753447775344789491197Escherichia coli K12, complete genomeconserved inner membrane protein7e-133473
NC_010473:4564590:4579561457956145807571197Escherichia coli str. K-12 substr. DH10B, complete genomeconserved inner membrane protein7e-133473
AC_000091:4472000:4484410448441044856061197Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein7e-133473
NC_010498:4821519:4834680483468048359031224Escherichia coli SMS-3-5, complete genomehypothetical protein2e-132472
NC_017047:4298207:4326185432618543273751191Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-0860.5
NC_015061:4203767:4232270423227042334601191Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-0860.5