Pre_GI: BLASTP Hits

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Query: NC_007613:4217557:4221089 Shigella boydii Sb227, complete genome

Start: 4221089, End: 4221688, Length: 600

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:4959323:495932349593234959922600Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein8e-113405
NC_010468:49074:490744907449664591Escherichia coli ATCC 8739, complete genomeputative bacteriophage protein1e-88325
NC_010468:1130000:115021811502181150808591Escherichia coli ATCC 8739, complete genomeputative bacteriophage protein1e-88325
NC_011740:448000:452034452034452447414Escherichia fergusonii ATCC 35469, complete genomeregulator protein cI2e-67254
NC_010498:4072681:408826040882604088664405Escherichia coli SMS-3-5, complete genomephage protein2e-55214
NC_016810:2871689:289680228968022897353552Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein9e-51199
NC_009436:3367194:338105733810573381608552Enterobacter sp. 638, complete genomeCI repressor9e-49192
NC_002655:301940:318447318447319004558Escherichia coli O157:H7 EDL933, complete genomeputative regulator encoded in prophage CP-933I6e-47186
NC_002695:301939:318446318446319003558Escherichia coli O157:H7 str. Sakai, complete genomeputative CI repressor6e-47186
NC_013008:306953:323638323638324195558Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulator encoded in prophage CP-933I6e-47186
NC_013941:338121:359420359420359977558Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCI repressor5e-46183
NC_014306:4376012:441031944103194410858540Erwinia billingiae Eb661, complete genomePhage CI repressor9e-43173
NC_004631:4661000:467416246741624674545384Salmonella enterica subsp. enterica serovar Typhi Ty2, completephage immunity repressor protein1e-37155
NC_003198:4676536:469127346912734691656384Salmonella enterica subsp. enterica serovar Typhi str. CT18,phage immunity repressor protein1e-37155
NC_016857:2871689:289697028969702897353384Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage immunity repressor protein1e-37155
NC_014121:677799:691835691835692167333Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeprotein ash (Protein cI)1e-36152
NC_013508:3593000:360692136069213607250330Edwardsiella tarda EIB202, complete genomeputative bacteriophage protein6e-35147
NC_011353:305820:322551322551322883333Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprotein ash2e-34145
NC_014306:4901390:493954549395454940084540Erwinia billingiae Eb661, complete genomePutative prophage CI repressor2e-32139
NC_009778:567000:595759595759596091333Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-31136
NC_011147:4460726:446244444624444462815372Salmonella enterica subsp. enterica serovar Paratyphi A strphage immunity repressor protein1e-29129
NC_006511:4465495:446721444672144467585372Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCphage immunity repressor protein1e-29129
NC_011083:2542876:255977325597732560168396Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,phage immunity repressor protein7e-25113
CP002797:2472908:247622824762282476623396Escherichia coli NA114, complete genomeputative phage protein1e-24112
NC_014121:1101093:111258111125811112976396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage immunity repressor protein1e-24112
NC_016845:575123:590397590397590591195Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage immunity repressor protein3e-23108
NC_021066:5342127:535856553585655358759195Raoultella ornithinolytica B6, complete genomephage immunity repressor protein3e-23108
NC_011080:2870428:288533828853382885532195Salmonella enterica subsp. enterica serovar Newport str. SL254,phage immunity repressor protein1e-22106
NC_010102:2862178:286489828648982865092195Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-21100
NC_011080:4703266:471821347182134718404192Salmonella enterica subsp. enterica serovar Newport str. SL254,phage immunity repressor protein9e-1890.1
NC_012917:3684840:368921536892153689756542Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1685.9
NC_014500:2019113:204330220433022044042741Dickeya dadantii 3937 chromosome, complete genomeputative prophage protein4e-1477.8
NC_020211:103371:103371103371103562192Serratia marcescens WW4, complete genomehypothetical protein2e-1272.4
NC_020211:996497:101053310105331010724192Serratia marcescens WW4, complete genomehypothetical protein3e-1271.6
NC_009801:1419324:142227414222741423128855Escherichia coli E24377A, complete genomephage regulatory protein, Rha family5e-1064.3
NC_007712:2897000:290163729016372902236600Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein6e-0960.8
NC_012917:833721:837635837635838179545Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-0755.5
NC_011094:380428:382009382009382185177Salmonella enterica subsp. enterica serovar Schwarzengrund strphage immunity repressor protein6e-0650.8
NC_015968:3301958:332463633246363324812177Enterobacter asburiae LF7a chromosome, complete genomephage immunity repressor protein6e-0650.8