Pre_GI: BLASTP Hits

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Query: NC_007613:4119771:4136726 Shigella boydii Sb227, complete genome

Start: 4136726, End: 4138375, Length: 1650

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:4405301:4442217444221744439081692Salmonella enterica subsp. enterica serovar Choleraesuis strputative CPA1 family, Na:H transport protein0842
NC_011094:4361238:4398206439820643998521647Salmonella enterica subsp. enterica serovar Schwarzengrund strNa+/H+ antiporter0842
NC_010067:3310336:3312463331246333141541692Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0836
NC_020181:3585898:3600246360024636018921647Enterobacter aerogenes EA1509E, complete genomePutative Na(+)/H(+) exchanger protein, CPA1 family precursor0816
NC_016612:1790256:1790256179025617918091554Klebsiella oxytoca KCTC 1686 chromosome, complete genomeNa+/H+ antiporter0761
NC_004547:843475:8566258566258582711647Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative sodium/hydrogen antiporter0679
NC_008702:369965:3699653699653716051641Azoarcus sp. BH72, complete genomeputative Na+/H+ antiporter2e-67256
NC_010995:1749054:1753438175343817550751638Cellvibrio japonicus Ueda107, complete genomeNa+/H+ antiporter8e-62238
NC_015634:2492771:2520388252038825224272040Bacillus coagulans 2-6 chromosome, complete genomeNa+/H+ antiporter6e-45182
NC_014169:2407266:2425094242509424271662073Bifidobacterium longum subsp. longum JDM301 chromosome, completesodium/hydrogen exchanger1e-32141
NC_014656:1704101:1704101170410117061732073Bifidobacterium longum subsp. longum BBMN68 chromosome, completenhap1e-32141
NC_006448:1451729:1456956145695614590222067Streptococcus thermophilus LMG 18311, complete genomeNa+:H+ antiporter3e-32140
NC_014371:1358615:2740274043231584Prevotella melaninogenica ATCC 25845 chromosome chromosome II,Na+/H+ antiporter2e-28127
NC_013061:2775623:2775623277562327771971575Pedobacter heparinus DSM 2366, complete genomeNa+/H+ antiporter6e-26119
NC_015291:665714:6837776837776858312055Streptococcus oralis Uo5, complete genomeNa+/H+ antiporter1e-24115
NC_015312:5240653:5253897525389752554861590Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeNa+/H+ antiporter6e-24112
NC_014494:614809:6148096148096168632055Streptococcus pneumoniae AP200 chromosome, complete genomeNhaP-type Na+/H+ and K+/H+ antiporter6e-24112
NC_014815:1490957:1516053151605315177651713Micromonospora sp. L5 chromosome, complete genomena+/h+ antiporter9e-1995.5
NC_016605:272231:2932492932492952762028Pediococcus claussenii ATCC BAA-344 chromosome, complete genomesodium/hydrogen exchanger family protein1e-1792
NC_010546:1911366:1925526192552619270941569Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceNa+/H+ antiporter6e-1582.8
NC_019673:9084045:9095761909576190973021542Saccharothrix espanaensis DSM 44229 complete genomeCPA1 family transporter7e-1582.8
NC_013530:3082587:3085151308515130869561806Xylanimonas cellulosilytica DSM 15894, complete genomesodium/hydrogen exchanger9e-1582
NC_011184:325797:3473403473403485391200Vibrio fischeri MJ11 chromosome I, complete sequenceNhaP-type Na+/H+ and K+/H+ antiporter3e-1480.9
NC_014815:2363460:2388658238865823902381581Micromonospora sp. L5 chromosome, complete genomena+/h+ antiporter6e-1479.7
NC_016783:1169821:1189793118979311913671575Corynebacterium diphtheriae INCA 402 chromosome, complete genomeputative Na+/H+ antiporter7e-1375.9
NC_016901:1527877:1534474153447415357781305Shewanella baltica OS678 chromosome, complete genomesodium/hydrogen exchanger1e-1275.5
NC_009052:1394000:1400146140014614014501305Shewanella baltica OS155, complete genomesodium/hydrogen exchanger2e-1274.7
NC_009665:1495473:1502903150290315042071305Shewanella baltica OS185 chromosome, complete genomesodium/hydrogen exchanger2e-1274.7
NC_011757:3540992:3540992354099235422541263Methylobacterium chloromethanicum CM4, complete genomesodium/hydrogen exchanger2e-1171.2
NC_012988:1777618:1808831180883118098801050Methylobacterium extorquens DM4, complete genomesodium/hydrogen exchanger1e-1068.2
NC_013210:57881:6150661506627681263Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_017101:54767:6113461134623961263Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_017117:54767:6113461134623961263Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-010, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_017130:54759:6112661126623881263Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_017134:54783:6115061150624121263Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_017136:54751:6111861118623801263Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_017143:54767:6113461134623961263Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-010, completeNa+/H+ antiporter NhaA/NhaP5e-1066.6
NC_010610:1178430:1227619122761912289771359Lactobacillus fermentum IFO 3956, complete genomeNa-H antiporter3e-0963.9
NC_016027:2446806:2460592246059224618541263Gluconacetobacter xylinus NBRC 3288, complete genomeNa+/H+ antiporter3e-0963.9
NC_012984:2681548:2688351268835126899521602Lactobacillus plantarum JDM1, complete genomeNa(+)/H(+) antiporter2e-0861.2
NC_015497:3497680:3515092351509235163751284Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomesodium/hydrogen exchanger5e-0860.1
NC_011206:1873297:1880250188025018814431194Acidithiobacillus ferrooxidans ATCC 53993, complete genomesodium/hydrogen exchanger4e-0860.1
NC_021150:3282702:3287922328792232891931272Azotobacter vinelandii CA6, complete genomeNa+/H+ antiporter NhaP protein4e-0860.1
NC_012560:3282704:3287924328792432891951272Azotobacter vinelandii DJ, complete genomeNa+/H+ antiporter NhaP protein4e-0860.1
NC_013851:2610847:2634772263477226360581287Allochromatium vinosum DSM 180 chromosome, complete genomesodium/hydrogen exchanger1e-0758.2
NC_009952:2217877:2234212223421222367192508Dinoroseobacter shibae DFL 12, complete genomehypothetical protein1e-0655.5
NC_015387:261799:2617992617992630371239Marinithermus hydrothermalis DSM 14884 chromosome, complete genomesodium/hydrogen exchanger2e-0654.7
NC_006677:1503513:1507798150779815089461149Gluconobacter oxydans 621H, complete genomeNa+/H+ Antiporter NhaA3e-0653.9
NC_011004:4073916:4106218410621841074711254Rhodopseudomonas palustris TIE-1, complete genomesodium/hydrogen exchanger5e-0653.1