Pre_GI: BLASTP Hits

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Query: NC_007613:4119771:4127177 Shigella boydii Sb227, complete genome

Start: 4127177, End: 4127593, Length: 417

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:4257310:426861042686104269026417Shigella boydii CDC 3083-94, complete genomehypothetical protein1e-77287
NC_021066:3769405:379075237907523791168417Raoultella ornithinolytica B6, complete genomethiamin phosphate synthase5e-60229
NC_020181:3585898:361778336177833618199417Enterobacter aerogenes EA1509E, complete genomeFIG00638366: hypothetical protein4e-56216
NC_011080:4461851:446269344626934463109417Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein4e-56216
NC_006905:4405301:440614344061434406559417Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein4e-56216
NC_011083:4466634:446747644674764467892417Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein4e-56216
NC_011094:4361238:436208043620804362496417Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-56216
NC_011205:4486142:448698444869844487400417Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-56216
NC_011274:4305812:430665443066544307070417Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-56216
NC_011294:4327904:432874643287464329162417Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-56216
NC_012125:4400636:440147844014784401894417Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-56216
NC_003197:4470683:447152544715254471941417Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein9e-56214
NC_003198:4315807:431664943166494317065417Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-56214
NC_004631:4300457:430129943012994301715417Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein9e-56214
NC_010102:4396500:439748143974814397897417Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-56214
NC_016810:4491975:449281744928174493233417Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-56214
NC_016832:4288980:428982242898224290238417Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-56214
NC_016856:4482845:448506744850674485483417Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein9e-56214
NC_016857:4491976:449281844928184493234417Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein9e-56214
NC_016860:4575772:457661445766144577030417Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-56214
NC_016863:4431831:443267344326734433089417Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein9e-56214
NC_017046:4490500:449147844914784491894417Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein9e-56214
NC_006511:4225455:422629742262974226713417Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-55213
NC_011147:4221000:422198442219844222400417Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-55213
NC_011149:4390315:439115743911574391573417Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein3e-55213
NC_016831:4286000:428700442870044287420417Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein7e-55212
NC_010067:3310336:335694033569403357404465Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-53205
NC_015761:4098481:409932240993224099738417Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-51201
NC_009831:2884851:290056229005622900981420Shewanella sediminis HAW-EB3, complete genomeprotein of unknown function UPF00473e-43173
NC_016830:6589575:659462665946266595051426Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein3e-43173
NC_018080:6048516:605024060502406050665426Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein3e-43173
NC_020209:4549563:455460745546074555032426Pseudomonas poae RE*1-1-14, complete genomesecondary thiamine-phosphate synthase enzyme4e-42169
NC_013421:4006085:402951440295144029933420Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function UPF00476e-42169
NC_013061:2775623:279673527967352797157423Pedobacter heparinus DSM 2366, complete genomeprotein of unknown function UPF00471e-40165
NC_016609:5890292:592796459279645928386423Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein7e-40162
NC_014532:2298628:231272923127292313148420Halomonas elongata DSM 2581, complete genomehypothetical protein4e-40162
NC_016112:562570:566433566433566864432Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein3e-39160
NC_012912:777592:794703794703795122420Dickeya zeae Ech1591, complete genomeprotein of unknown function UPF00478e-39158
NC_014655:2874640:287743428774342877865432Leadbetterella byssophila DSM 17132 chromosome, complete genomehypothetical protein3e-37153
NC_015703:5649260:565141456514145651836423Runella slithyformis DSM 19594 chromosome, complete genomehypothetical protein3e-36150
NC_015844:3524175:352548935254893525911423Zobellia galactanivorans, complete genomehypothetical protein4e-35146
NC_014472:294775:312976312976313398423Flavobacteriales bacterium HTCC2170 chromosome, complete genomehypothetical protein9e-35145
NC_009078:74954:957469574696165420Burkholderia pseudomallei 1106a chromosome II, complete sequencehypothetical protein9e-26115
NC_007435:1914375:193482419348241935243420Burkholderia pseudomallei 1710b chromosome II, complete sequenceconserved hypothetical protein TIGR001499e-26115
NC_009075:92210:115628115628116047420Burkholderia pseudomallei 668 chromosome II, complete sequencehypothetical protein9e-26115
NC_006351:73000:963029630296721420Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein9e-26115
NC_010552:196457:212027212027212446420Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function UPF00472e-23107
NC_007604:41495:766147661477063450Synechococcus elongatus PCC 7942, complete genomehypothetical protein2e-23107
NC_008312:6869160:687112768711276871543417Trichodesmium erythraeum IMS101, complete genomeprotein of unknown function UPF00472e-23107
NC_008319:787881:803842803842804501660Synechococcus sp. CC9311, complete genomehypothetical protein3e-23106
NC_007205:1232734:125454012545401254959420Candidatus Pelagibacter ubique HTCC1062, complete genomeUncharacterized protein family UPF0043e-21100
NC_018643:857911:881334881334881750417Alpha proteobacterium HIMB5 chromosome, complete genomesecondary thiamine-phosphate synthase enzyme4e-2199.8
NC_017322:2191391:221302022130202213442423Sinorhizobium meliloti BL225C chromosome, complete genomehypothetical protein1e-2098.2
NC_003047:2477810:249942824994282499850423Sinorhizobium meliloti 1021, complete genomehypothetical protein1e-2098.2
NC_009481:1523764:152844615284461529084639Synechococcus sp. WH 7803 chromosome, complete genomehypothetical protein5e-1786.3
NC_007796:1731500:175739217573921757793402Methanospirillum hungatei JF-1, complete genomeprotein of unknown function UPF00471e-1479
NC_014122:726070:741018741018741416399Methanocaldococcus infernus ME chromosome, complete genomeprotein of unknown function UPF00474e-1477
NC_014654:2138794:215204221520422152443402Halanaerobium sp. 'sapolanicus' chromosome, complete genomeprotein of unknown function UPF00473e-1373.9
NC_010730:813534:816106816106816504399Sulfurihydrogenibium sp. YO3AOP1, complete genomeprotein of unknown function UPF00471e-1271.6
NC_014377:669216:673432673432673842411Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein of unknown function UPF00472e-1271.2
NC_015391:2059191:206485920648592065281423Carnobacterium sp. 17-4 chromosome, complete genomehypothetical protein4e-1270.1
NC_011899:86800:883788837888776399Halothermothrix orenii H 168, complete genomehypothetical protein1e-1168.9
NC_017080:1194199:120858712085871209009423Phycisphaera mikurensis NBRC 102666, complete genomehypothetical protein1e-1168.6
NC_003869:2099000:209907620990762099483408Thermoanaerobacter tengcongensis MB4, complete genomehypothetical protein2e-1168.2
NC_015732:773143:787528787528787920393Spirochaeta caldaria DSM 7334 chromosome, complete genomehypothetical protein2e-1167.8
NC_003030:1037885:103906510390651039463399Clostridium acetobutylicum ATCC 824, complete genomehypothetical protein4e-1167
NC_015687:1037706:103888610388861039284399Clostridium acetobutylicum DSM 1731 chromosome, complete genomehypothetical protein4e-1167
NC_017295:1036348:103851310385131038911399Clostridium acetobutylicum EA 2018 chromosome, complete genomehypothetical protein4e-1167
NC_015499:309394:323585323585323986402Thermodesulfobium narugense DSM 14796 chromosome, complete genomeprotein of unknown function UPF00478e-1165.9
NC_011126:922182:936040936040936441402Hydrogenobaculum sp. Y04AAS1, complete genomeprotein of unknown function UPF00473e-1063.9
NC_015587:905255:921205921205921606402Hydrogenobaculum sp. SHO chromosome, complete genomeprotein of unknown function UPF00474e-1063.5
NC_020411:905335:921285921285921686402Hydrogenobaculum sp. HO, complete genomesecondary thiamine-phosphate synthase enzyme4e-1063.5
NC_015557:905145:921095921095921496402Hydrogenobaculum sp. 3684 chromosome, complete genomeprotein of unknown function UPF00474e-1063.5
NC_010723:2231834:224287022428702243277408Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein7e-1062.8
NC_011978:1812000:181767918176791818098420Thermotoga neapolitana DSM 4359, complete genomehypothetical protein2e-0857.8
NC_003106:2060628:207643220764322076836405Sulfolobus tokodaii str. 7, complete genomehypothetical protein9e-0855.5
NC_013642:505518:520772520772521191420Thermotoga naphthophila RKU-10, complete genomeprotein of unknown function UPF00471e-0755.1
NC_013741:27353:436554365544065411Archaeoglobus profundus DSM 5631, complete genomeprotein of unknown function UPF00475e-0753.1
NC_020453:7409402:743160974316097432028420Agromonas oligotrophica S58 DNA, complete genomehypothetical protein7e-0752.8
NC_013939:1841890:185978018597801860199420Deferribacter desulfuricans SSM1, complete genomehypothetical protein6e-0752.8
NC_015680:369777:369777369777370178402Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein1e-0652.4
NC_015435:120334:123036123036123440405Metallosphaera cuprina Ar-4 chromosome, complete genomehypothetical protein1e-0651.6
NC_014209:1392115:140950714095071409923417Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,protein of unknown function UPF00472e-0651.6
NC_014964:923681:943156943156943572417Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehypothetical protein2e-0651.2
NC_014538:1075720:107946510794651079881417Thermoanaerobacter sp. X513 chromosome, complete genomehypothetical protein2e-0651.2
NC_010320:1860801:187446318744631874879417Thermoanaerobacter sp. X514 chromosome, complete genomehypothetical protein2e-0651.2
NC_010321:947233:950963950963951379417Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completehypothetical protein2e-0651.2
NC_007181:55685:607976079761201405Sulfolobus acidocaldarius DSM 639, complete genomehypothetical protein3e-0650.4
NC_014820:1057826:107650110765011076920420Cenarchaeum symbiosum A, complete genomehypothetical protein4e-0650.1
NC_010628:675445:695746695746696183438Nostoc punctiforme PCC 73102, complete genomeprotein of unknown function UPF00474e-0650.1
NC_017243:349144:366513366513366929417Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein8e-0649.3