Pre_GI: BLASTP Hits

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Query: NC_007613:3470314:3488100 Shigella boydii Sb227, complete genome

Start: 3488100, End: 3490142, Length: 2043

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:3529657:3529657352965735316992043Escherichia coli BW2952 chromosome, complete genomeoligopeptidase A01348
NC_013941:4249871:4266043426604342680852043Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeOligopeptidase A01348
NC_010468:231000:2482742482742503162043Escherichia coli ATCC 8739, complete genomeOligopeptidase A01348
AC_000091:3995233:3995233399523339972752043Escherichia coli W3110 DNA, complete genomeoligopeptidase A01348
NC_000913:3624826:3641163364116336432052043Escherichia coli K12, complete genomeoligopeptidase A01348
NC_009800:3685651:3685651368565136876932043Escherichia coli HS, complete genomeoligopeptidase A01348
NC_010473:3722571:3738908373890837409502043Escherichia coli str. K-12 substr. DH10B, complete genomeoligopeptidase A01348
NC_010498:3838419:3854565385456538566072043Escherichia coli SMS-3-5, complete genomeoligopeptidase A01348
NC_011415:3887997:3887997388799738900392043Escherichia coli SE11 chromosome, complete genomeoligopeptidase A01348
NC_011751:4074586:4090732409073240927742043Escherichia coli UMN026 chromosome, complete genomeoligopeptidase A01346
NC_011748:3983432:4007948400794840099902043Escherichia coli 55989, complete genomeoligopeptidase A01346
CU928145:3983432:4007948400794840099902043Escherichia coli 55989 chromosome, complete genomeoligopeptidase A01346
NC_012947:248000:2653042653042673462043Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeoligopeptidase A01346
NC_012967:3549880:3573830357383035758722043Escherichia coli B str. REL606 chromosome, complete genomeoligopeptidase A01346
NC_016902:246767:2654112654112674532043Escherichia coli KO11FL chromosome, complete genomeoligopeptidase A01344
CP002516:246767:2654112654112674532043Escherichia coli KO11, complete genomeOligopeptidase A01344
CP002185:3822470:3838620383862038406622043Escherichia coli W, complete genomeoligopeptidase A01344
NC_004337:3590323:3618826361882636208682043Shigella flexneri 2a str. 301, complete genomeoligopeptidase A01342
NC_004741:4132056:4152980415298041550222043Shigella flexneri 2a str. 2457T, complete genomeoligopeptidase A01342
NC_007384:3897000:3914492391449239165342043Shigella sonnei Ss046, complete genomeoligopeptidase A01342
NC_016822:3923908:3941373394137339434152043Shigella sonnei 53G, complete genomeoligopeptidase A01342
NC_014121:5000069:5022572502257250246142043Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeoligopeptidase A01295
NC_006905:3717306:3718071371807137201132043Salmonella enterica subsp. enterica serovar Choleraesuis stroligopeptidase A01289
NC_009778:4188000:4188021418802141901082088Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein01256
NC_010634:4463727:4497136449713644991782043Yersinia pseudotuberculosis PB1/+, complete genomepeptidase M3A and M3B thimet/oligopeptidase F01105
NC_015633:338000:3546413546413566832043Vibrio anguillarum 775 chromosome chromosome I, complete sequenceOligopeptidase A0996
NC_012668:442601:4449104449104470392130Vibrio cholerae MJ-1236 chromosome 1, complete sequenceoligopeptidase A0991
NC_016944:168530:1920441920441940862043Vibrio cholerae IEC224 chromosome I, complete sequenceoligopeptidase A0990
NC_016445:2593800:2617302261730226193442043Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeoligopeptidase A0990
NC_002505:168532:1920341920341940762043Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeoligopeptidase A0990
NC_013416:875758:8944038944038964422040Aggregatibacter actinomycetemcomitans D11S-1, complete genomeoligopeptidase A0966
NC_016513:1185241:1203884120388412059232040Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeoligopeptidase A0962
NC_008309:842072:8589948589948610332040Haemophilus somnus 129PT, complete genomeoligopeptidase A0960
NC_009092:4337617:4357510435751043595492040Shewanella loihica PV-4, complete genomeOligopeptidase A0910
NC_009665:5072413:5072413507241350744522040Shewanella baltica OS185 chromosome, complete genomeoligopeptidase A0903
NC_009997:5188221:5188221518822151902602040Shewanella baltica OS195, complete genomeOligopeptidase A0894
NC_016901:5130147:5130147513014751321862040Shewanella baltica OS678 chromosome, complete genomeoligopeptidase A0894
NC_013960:452493:4672544672544692932040Nitrosococcus halophilus Nc4 chromosome, complete genomeOligopeptidase A0831
NC_009656:44500:7347073470755152046Pseudomonas aeruginosa PA7 chromosome, complete genomeoligopeptidase A0768
NC_015580:3779724:3797888379788837999152028Novosphingobium sp. PP1Y, complete genomeoligopeptidase A1e-156554
NC_011884:2551715:2577958257795825800602103Cyanothece sp. PCC 7425, complete genomeOligopeptidase A1e-149530
NC_008312:7132163:7148647714864771507522106Trichodesmium erythraeum IMS101, complete genomeOligopeptidase A3e-145516
NC_014935:1223817:1224660122466012266151956Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeoligopeptidase a2e-139496
NC_013173:1356526:1356526135652613586102085Desulfomicrobium baculatum DSM 4028, complete genomeOligopeptidase A5e-133475
NC_015161:758929:7754457754457775202076Deinococcus proteolyticus MRP chromosome, complete genomeOligopeptidase A3e-123443
NC_018868:4010615:4026113402611340282752163Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeDipeptidyl carboxypeptidase Dcp7e-97355
NC_015164:2683162:2684728268472826868782151Bacteroides salanitronis DSM 18170 chromosome, complete genomePeptidyl-dipeptidase Dcp5e-97355
NC_014924:3334386:3339257333925733414102154Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomePeptidyl-dipeptidase Dcp5e-95348
NC_013159:2098500:2131839213183921338902052Saccharomonospora viridis DSM 43017, complete genomepeptidyl-dipeptidase Dcp2e-94347
NC_014371:177536:2128542128542150012148Prevotella melaninogenica ATCC 25845 chromosome chromosome II,putative Peptidyl-dipeptidase dcp3e-93343
NC_015567:2420169:2430623243062324328242202Serratia sp. AS9 chromosome, complete genomepeptidyl-dipeptidase Dcp2e-90333
NC_015566:2420287:2430741243074124329422202Serratia sp. AS12 chromosome, complete genomepeptidyl-dipeptidase Dcp2e-90333
NC_002488:1812696:1845785184578518479352151Xylella fastidiosa 9a5c, complete genomepeptidyl-dipeptidase2e-89330
NC_015064:2421034:2435960243596024380652106Acidobacterium sp. MP5ACTX9 chromosome, complete genomePeptidyl-dipeptidase Dcp2e-89330
NC_016514:2079975:2081642208164220836752034Enterobacter cloacae EcWSU1 chromosome, complete genomepeptidyl-dipeptidase dcp3e-89329
NC_014618:2423661:2438504243850424405492046Enterobacter cloacae SCF1 chromosome, complete genomepeptidyl-dipeptidase Dcp2e-86320
NC_008563:1651270:1668546166854616705912046Escherichia coli APEC O1, complete genomeputative oxidoreductase YdfG2e-86320
NC_009800:1632585:1648403164840316504482046Escherichia coli HS, complete genomepeptidyl-dipeptidase Dcp5e-86319
CP002185:1727493:1744272174427217463172046Escherichia coli W, complete genomedipeptidyl carboxypeptidase II7e-86318
NC_015671:2011462:2011462201146220135462085Cellvibrio gilvus ATCC 13127 chromosome, complete genomepeptidyl-dipeptidase Dcp2e-85317
NC_011741:1625535:1642314164231416443592046Escherichia coli IAI1 chromosome, complete genomedipeptidyl carboxypeptidase II3e-85316
CU928160:1625535:1642314164231416443592046Escherichia coli IAI1 chromosome, complete genomedipeptidyl carboxypeptidase II3e-85316
NC_010473:1712984:1712984171298417150292046Escherichia coli str. K-12 substr. DH10B, complete genomedipeptidyl carboxypeptidase II7e-85315
NC_012947:2189533:2205641220564122077522112Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completedipeptidyl carboxypeptidase II7e-85315
NC_010498:1615980:1615980161598016180252046Escherichia coli SMS-3-5, complete genomepeptidyl-dipeptidase Dcp6e-85315
NC_011415:1715644:1732423173242317344682046Escherichia coli SE11 chromosome, complete genomedipeptidyl carboxypeptidase II5e-85315
NC_012967:1593101:1593101159310115951462046Escherichia coli B str. REL606 chromosome, complete genomedipeptidyl carboxypeptidase II5e-85315
AC_000091:1627049:1627049162704916290942046Escherichia coli W3110 DNA, complete genomedipeptidyl carboxypeptidase II7e-85315
NC_013174:1254874:1268025126802512701422118Jonesia denitrificans DSM 20603, complete genomePeptidyl-dipeptidase Dcp5e-84312
NC_013850:2846069:2871386287138628734312046Klebsiella variicola At-22 chromosome, complete genomePeptidyl-dipeptidase Dcp7e-82305
NC_007908:1108494:1110315111031511123782064Rhodoferax ferrireducens T118, complete genomePeptidyl-dipeptidase Dcp2e-81304
NC_011283:2836000:2909016290901629110612046Klebsiella pneumoniae 342 chromosome, complete genomedipeptidyl carboxypeptidase II9e-81301
NC_014816:2446236:2451478245147824535892112Asticcacaulis excentricus CB 48 chromosome 1, complete sequencepeptidyl-dipeptidase dcp5e-79296
NC_015376:3249773:3256871325687132589372067Burkholderia gladioli BSR3 chromosome chromosome 2, completepeptidyl-dipeptidase Dcp4e-76286
NC_015554:3696970:3716239371623937184462208Alteromonas sp. SN2 chromosome, complete genomepeptidyl-dipeptidase Dcp3e-76286
NC_016801:1782401:1784916178491617869252010Corynebacterium diphtheriae C7 (beta) chromosome, complete genomepeptidyl-dipeptidase2e-72274
NC_016802:1709840:1717585171758517195942010Corynebacterium diphtheriae HC02 chromosome, complete genomepeptidyl-dipeptidase6e-72272
NC_016786:1751204:1753719175371917557282010Corynebacterium diphtheriae HC01 chromosome, complete genomepeptidyl-dipeptidase7e-72272
NC_016782:1745374:1753119175311917551282010Corynebacterium diphtheriae 241 chromosome, complete genomepeptidyl-dipeptidase7e-72272
NC_016789:1805503:1808018180801818100272010Corynebacterium diphtheriae PW8 chromosome, complete genomepeptidyl-dipeptidase1e-71271
NC_016799:1787687:1793009179300917950182010Corynebacterium diphtheriae 31A chromosome, complete genomepeptidyl-dipeptidase9e-72271
NC_016790:1702856:1705371170537117073802010Corynebacterium diphtheriae VA01 chromosome, complete genomepeptidyl-dipeptidase2e-71270
NC_002935:1763886:1768327176832717703061980Corynebacterium diphtheriae NCTC 13129, complete genomePutative peptidase3e-71270
NC_016788:1730458:1732973173297317349822010Corynebacterium diphtheriae HC04 chromosome, complete genomepeptidyl-dipeptidase5e-71269
NC_016787:1726978:1729493172949317315022010Corynebacterium diphtheriae HC03 chromosome, complete genomepeptidyl-dipeptidase5e-71269
NC_016783:1758319:1760834176083417628432010Corynebacterium diphtheriae INCA 402 chromosome, complete genomepeptidyl-dipeptidase8e-70265
NC_008095:7211395:7233069723306972351322064Myxococcus xanthus DK 1622, complete genomepeptidase, M3 (thimet oligopeptidase) family9e-65248
NC_014623:7963238:7965833796583379677761944Stigmatella aurantiaca DW4/3-1 chromosome, complete genomepeptidase, m3 (thimet oligopeptidase) family2e-64247
NC_017030:7967192:7985540798554079874921953Corallococcus coralloides DSM 2259 chromosome, complete genomeM3 family peptidase3e-64246
NC_014507:2479221:2495107249510724972032097Methanoplanus petrolearius DSM 11571 chromosome, complete genomeThimet oligopeptidase1e-55218