Pre_GI: BLASTP Hits

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Query: NC_007613:3470314:3485822 Shigella boydii Sb227, complete genome

Start: 3485822, End: 3487291, Length: 1470

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012967:3549880:3571552357155235730211470Escherichia coli B str. REL606 chromosome, complete genomeinner membrane transporter YhiP0952
NC_012947:248000:2681552681552696241470Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeinner membrane transporter YhiP0952
CP002185:3822470:3836342383634238378111470Escherichia coli W, complete genomepredicted transporter0952
NC_011748:3983432:4005670400567040071391470Escherichia coli 55989, complete genomeinner membrane transporter YhiP0952
CU928145:3983432:4005670400567040071391470Escherichia coli 55989 chromosome, complete genometransporter0952
NC_010473:3722571:3736630373663037380991470Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transporter0951
AC_000091:3995233:3998084399808439995531470Escherichia coli W3110 DNA, complete genomepredicted transporter0951
NC_000913:3624826:3638885363888536403541470Escherichia coli K12, complete genomepredicted transporter0951
NC_010468:231000:2511252511252525941470Escherichia coli ATCC 8739, complete genomeamino acid/peptide transporter0951
NC_007384:3897000:3912214391221439136831470Shigella sonnei Ss046, complete genomeputative transport protein0951
NC_016822:3923908:3939095393909539405641470Shigella sonnei 53G, complete genomedipeptide/tripeptide permease B0951
NC_011751:4074586:4088454408845440899231470Escherichia coli UMN026 chromosome, complete genomeinner membrane transporter YhiP0950
NC_013941:4249871:4263765426376542652341470Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0949
NC_010498:3838419:3852287385228738537561470Escherichia coli SMS-3-5, complete genomeamino acid/peptide transporter0947
NC_008258:3550500:3577135357713535785801446Shigella flexneri 5 str. 8401, complete genome0927
NC_015566:2328771:2332953233295323344731521Serratia sp. AS12 chromosome, complete genomeamino acid/peptide transporter4e-131468
NC_015567:2328782:2332964233296423344841521Serratia sp. AS9 chromosome, complete genomeamino acid/peptide transporter4e-131468
NC_008014:146282:1462821462821477241443Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequenceproton/peptide symporter family protein4e-87322
NC_015696:47484:4934849348507841437Francisella sp. TX077308 chromosome, complete genomeDi/tripeptide permease DtpA2e-56220
NC_002488:1775629:1798531179853118000631533Xylella fastidiosa 9a5c, complete genomedi-tripeptide ABC transporter membrane protein1e-55217
NC_008577:1579950:1585825158582515872941470Shewanella sp. ANA-3 chromosome 1, complete sequenceamino acid/peptide transporter2e-51203
NC_020211:2012480:2012480201248020140331554Serratia marcescens WW4, complete genomeamino acid/peptide transporter5e-51202
NC_008322:1595500:1595622159562215970911470Shewanella sp. MR-7, complete genomeamino acid/peptide transporter3e-50199
NC_011663:1709003:1711122171112217126271506Shewanella baltica OS223 chromosome, complete genomeamino acid/peptide transporter5e-50199
NC_008700:2701500:2731622273162227330941473Shewanella amazonensis SB2B, complete genomeamino acid/peptide transporter2e-49197
NC_009052:3381943:3408984340898434104891506Shewanella baltica OS155, complete genomeamino acid/peptide transporter1e-49197
NC_011566:1597751:1597751159775115992201470Shewanella piezotolerans WP3, complete genomeAmino acid/peptide transporter1e-49197
NC_011283:785973:8098728098728114251554Klebsiella pneumoniae 342 chromosome, complete genomeamino acid/peptide transporter7e-48192
NC_014541:1165991:1168278116827811697831506Ferrimonas balearica DSM 9799 chromosome, complete genomeamino acid/peptide transporter8e-48191
NC_009092:1599526:1606406160640616078751470Shewanella loihica PV-4, complete genomeamino acid/peptide transporter1e-47191
NC_014618:1295322:1309276130927613108291554Enterobacter cloacae SCF1 chromosome, complete genomeamino acid/peptide transporter2e-46186
NC_019904:3533344:3535236353523635368191584Echinicola vietnamensis DSM 17526 chromosome, complete genomeamino acid/peptide transporter (peptide:H symporter)2e-45184
NC_009665:3460906:3487072348707234885741503Shewanella baltica OS185 chromosome, complete genomeamino acid/peptide transporter2e-44181
NC_011094:842038:8420388420388435191482Salmonella enterica subsp. enterica serovar Schwarzengrund strinner membrane transporter YbgH3e-44180
NC_004631:2205821:2227835222783522293161482Salmonella enterica subsp. enterica serovar Typhi Ty2, completePTR2-family transport protein5e-44179
NC_011083:824659:8246598246598261401482Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane transporter YbgH5e-44179
NC_010102:2322866:2346314234631423477951482Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-44179
NC_003198:751779:7517797517797532601482Salmonella enterica subsp. enterica serovar Typhi str. CT18,PTR2-family transport protein5e-44179
NC_003197:776238:7762387762387777191482Salmonella typhimurium LT2, complete genomeputative POT family transport protein5e-44179
NC_016832:2201860:2224600222460022260811482Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Dipeptide permease D5e-44179
NC_016856:776735:7767357767357782161482Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SPOT family transport protein5e-44179
NC_016863:776734:7767347767347782151482Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1POT family transport protein5e-44179
NC_009848:354202:3823773823773838701494Bacillus pumilus SAFR-032, complete genomePOT family proton (H+)-dependent oligopeptide transporter4e-44179
NC_011147:2085241:2108007210800721094881482Salmonella enterica subsp. enterica serovar Paratyphi A strPTR2-family transport protein4e-44179
NC_006511:2090058:2112824211282421143051482Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCPTR2-family transport protein4e-44179
NC_017046:775636:7756367756367771171482Salmonella enterica subsp. enterica serovar Typhimurium str. 798PTR2-family transport protein5e-44179
NC_016857:775649:7756497756497771301482Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74PTR2-family transport protein5e-44179
NC_016810:775649:7756497756497771301482Salmonella enterica subsp. enterica serovar Typhimurium strPTR2 family transport protein5e-44179
NC_016605:272231:2883742883742898431470Pediococcus claussenii ATCC BAA-344 chromosome, complete genomeH+ symporter family protein1e-43177
NC_011080:780850:7808507808507823311482Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane transporter YbgH3e-43176
NC_010468:3209326:3212669321266932141501482Escherichia coli ATCC 8739, complete genomeamino acid/peptide transporter3e-42173
NC_012947:3077922:3081265308126530827461482Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeamino acid/peptide transporter6e-42172
NC_012967:707083:7218607218607233411482Escherichia coli B str. REL606 chromosome, complete genomeputative transporter6e-42172
CP002185:794732:8117378117378132181482Escherichia coli W, complete genomepredicted transporter5e-42172
NC_006510:2044347:2067021206702120685111491Geobacillus kaustophilus HTA426, complete genomedi-tripeptide ABC transporter (permease)4e-42172
NC_008525:1493317:1501096150109615025621467Pediococcus pentosaceus ATCC 25745, complete genomeDipeptide/tripeptide permease1e-41171
NC_015975:380500:4010554010554025241470Lactobacillus ruminis ATCC 27782 chromosome, complete genomeDi-/tripeptide transporter8e-40165
NC_012559:2663747:2704179270417927055671389Laribacter hongkongensis HLHK9, complete genomeprobable di-tripeptide ABC transporter8e-40165
NC_015428:1544728:1546800154680015482931494Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeamino acid/peptide transporter2e-39163
NC_008245:650243:6709146709146724821569Francisella tularensis subsp. tularensis FSC 198, complete genomeProton-dependent oligopeptide transport (POT) family protein2e-38160
NC_020211:4168189:4190725419072541921761452Serratia marcescens WW4, complete genomeputative dipeptide and tripeptide permease5e-38159
NC_007606:4182188:4182188418218841836451458Shigella dysenteriae Sd197, complete genomeputative peptide transporter5e-38159
CP002797:4411763:4431168443116844326251458Escherichia coli NA114, complete genomeDi/tripeptide permease YjdL4e-38159
NC_013361:5319497:5321251532125153227081458Escherichia coli O26:H11 str. 11368 chromosome, complete genometransporter3e-38159
NC_010468:4252940:4278056427805642795131458Escherichia coli ATCC 8739, complete genomeamino acid/peptide transporter3e-38159
NC_017047:1796000:1797131179713117986121482Rahnella aquatilis HX2 chromosome, complete genomeamino acid/peptide transporter9e-37155
NC_007929:1290568:1295740129574012972091470Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDi-/tripeptide transporter6e-37155
NC_015497:1287877:1306977130697713084641488Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeamino acid/peptide transporter6e-37155
NC_015978:412856:4294474294474309281482Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completeDi-/tripeptide transporter5e-37155
NC_008497:556365:5690325690325706391608Lactobacillus brevis ATCC 367, complete genomeDipeptide/tripeptide permease8e-36151
NC_017297:1700000:1716490171649017178931404Clostridium botulinum F str. 230613 chromosome, complete genomeamino acid/peptide transporter2e-35150
NC_009699:1698951:1716357171635717177601404Clostridium botulinum F str. Langeland chromosome, complete genomeamino acid/peptide transporter2e-35150
NC_012658:1658505:1672894167289416742971404Clostridium botulinum Ba4 str. 657 chromosome, complete genomeamino acid/peptide transporter2e-35150
NC_009513:303043:3218473218473233461500Lactobacillus reuteri F275, complete genomeamino acid/peptide transporter2e-34147
NC_015697:1480552:1500832150083215023311500Lactobacillus reuteri SD2112 chromosome, complete genomeamino acid/peptide transporter3e-34146
NC_019673:3253650:3270364327036432718391476Saccharothrix espanaensis DSM 44229 complete genomeputative transporter6e-33142
NC_014039:151631:1714991714991730761578Propionibacterium acnes SK137 chromosome, complete genomeamino acid/peptide transporter (Peptide:H+ symporter)1e-32141
NC_007164:1434305:1459143145914314606721530Corynebacterium jeikeium K411, complete genomeputative dipeptide/tripeptide permease1e-30134
NC_015144:802288:8219378219378235231587Weeksella virosa DSM 16922 chromosome, complete genomeamino acid/peptide transporter3e-30133
NC_006087:237500:2614362614362629291494Leifsonia xyli subsp. xyli str. CTCB07, complete genomepeptide transporter, PTR family1e-29131
NC_009257:963536:9850759850759865321458Francisella tularensis subsp. tularensis WY96-3418 chromosome,amino acid transporter1e-27124
NC_016783:1169821:1186126118612611876221497Corynebacterium diphtheriae INCA 402 chromosome, complete genomeputative proton-dependent oligopeptide transporter7e-27122
NC_020302:85821:1059221059221074481527Corynebacterium halotolerans YIM 70093 = DSM 44683, completetripeptide transporter5e-25115
NC_015144:802288:8253798253798271331755Weeksella virosa DSM 16922 chromosome, complete genomeamino acid/peptide transporter4e-24112
NC_016781:1039716:1048074104807410495701497Corynebacterium pseudotuberculosis 3/99-5 chromosome, completetransporter yclF2e-21104
NC_017031:1039548:1047906104790610494111506Corynebacterium pseudotuberculosis P54B96 chromosome, completeputative transporter yclF1e-21104
NC_017301:1037519:1047719104771910492241506Corynebacterium pseudotuberculosis C231 chromosome, completetransporter yclF1e-21104
NC_017305:1037133:1045491104549110469961506Corynebacterium pseudotuberculosis PAT10 chromosome, completetransporter yclF1e-21104
NC_014329:1041556:1048083104808310495881506Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein1e-21104
NC_017300:1045555:1045555104555510470601506Corynebacterium pseudotuberculosis 1002 chromosome, completetransporter yclF1e-21104
NC_017303:1039562:1047920104792010494161497Corynebacterium pseudotuberculosis I19 chromosome, complete genomeputative transporter yclF1e-21104
NC_002946:1902642:1925126192512619265831458Neisseria gonorrhoeae FA 1090, complete genomeputative peptide transporter8e-21102
NC_004369:3082691:3101632310163231032391608Corynebacterium efficiens YS-314, complete genomeputative tripeptide transporter1e-20101
NC_020541:1510782:1515728151572815172811554Rhodanobacter sp. 2APBS1, complete genomeamino acid/peptide transporter (peptide:H symporter)5e-1066.2
NC_015389:114469:1144691144691159771509Coriobacterium glomerans PW2 chromosome, complete genomeamino acid/peptide transporter9e-0858.9