Pre_GI: BLASTP Hits

Some Help

Query: NC_007613:3470314:3473046 Shigella boydii Sb227, complete genome

Start: 3473046, End: 3474113, Length: 1068

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3625000:3628896362889636299631068Shigella flexneri 2002017 chromosome, complete genomeAuxiliary transport protein, membrane fusion protein (MFP) family7e-154543
NC_010498:3838419:3841151384115138422181068Escherichia coli SMS-3-5, complete genomeMFP family transporter1e-153543
NC_012947:248000:2798862798862809531068Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completesecretion protein HlyD1e-153543
NC_012967:3549880:3560223356022335612901068Escherichia coli B str. REL606 chromosome, complete genomeputative HlyD family secretion protein1e-153543
NC_008258:3550500:3554590355459035556571068Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-154543
NC_004741:4160500:4178757417875741798241068Shigella flexneri 2a str. 2457T, complete genomehypothetical protein7e-154543
NC_004337:3590323:3594179359417935952461068Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-154543
NC_011751:4074586:4077318407731840783851068Escherichia coli UMN026 chromosome, complete genomeputative HlyD family secretion protein1e-153542
NC_016822:3923908:3927764392776439288311068Shigella sonnei 53G, complete genomehypothetical protein1e-153542
NC_013941:4249871:4252603425260342536701068Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeAuxiliary transport protein, membrane fusion protein (MFP) family2e-153542
CU928145:3958572:3961304396130439623711068Escherichia coli 55989 chromosome, complete genomeputative HlyD family secretion protein3e-153541
NC_011748:3958572:3961304396130439623711068Escherichia coli 55989, complete genomeputative HlyD family secretion protein3e-153541
AC_000091:3995233:4009813400981340108801068Escherichia coli W3110 DNA, complete genomepredicted HlyD family secretion protein3e-153541
NC_000913:3624826:3627558362755836286251068Escherichia coli K12, complete genomepredicted HlyD family secretion protein3e-153541
NC_007384:3897000:3900936390093639020031068Shigella sonnei Ss046, complete genomehypothetical protein1e-152539
CP002185:3822470:3825202382520238262691068Escherichia coli W, complete genomepredicted HlyD family secretion protein1e-152539
NC_007973:1821753:1824523182452318255901068Ralstonia metallidurans CH34 chromosome 1, complete sequencesecretion protein HlyD9e-85313
NC_016830:3869572:3893476389347638945521077Pseudomonas fluorescens F113 chromosome, complete genomehypothetical protein1e-84313
NC_010814:3673983:3677891367789136789641074Geobacter lovleyi SZ, complete genomesecretion protein HlyD family protein6e-84311
NC_018697:618832:6262226262226273251104Cycloclasticus sp. P1 chromosome, complete genomeHlyD-family secretion protein, yhiI-like protein3e-83308
NC_012691:2614603:2690955269095526920341080Tolumonas auensis DSM 9187, complete genomesecretion protein HlyD family protein3e-82305
NC_017059:747624:7652117652117663111101Rhodospirillum photometricum DSM 122, complete genomeHlyD family secretion protein3e-74278
NC_020541:2264521:226556722655672266403837Rhodanobacter sp. 2APBS1, complete genome4e-58225
NC_014315:2834000:2840079284007928411071029Nitrosococcus watsoni C-113 chromosome, complete genomeHlyD family secretion protein2e-35150
NC_016629:415711:4324784324784335301053Desulfovibrio africanus str. Walvis Bay chromosome, completesecretion protein HlyD family protein4e-1995.9
NC_014926:819163:8204498204498216151167Thermovibrio ammonificans HB-1 chromosome, complete genomesecretion protein HlyD family protein5e-1995.5
NC_010655:1606901:1647982164798216490041023Akkermansia muciniphila ATCC BAA-835, complete genomesecretion protein HlyD family protein6e-1685.5
NC_009454:1577319:158027115802711581248978Pelotomaculum thermopropionicum SI, complete genomemembrane-fusion protein2e-1583.2
NC_015850:1060000:1078648107864810796821035Acidithiobacillus caldus SM-1 chromosome, complete genomesecretion protein HlyD family protein2e-1480.5
NC_009253:3317533:3321619332161933226801062Desulfotomaculum reducens MI-1 chromosome, complete genomesecretion protein HlyD family protein9e-1478.2
NC_015224:1641819:164181916418191642805987Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein4e-1375.9
NC_015942:2213710:2213710221371022147441035Acidithiobacillus ferrivorans SS3 chromosome, complete genomesecretion protein HlyD family protein1e-1274.3
NC_020829:4390417:439398043939804394951972Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein2e-1273.9
NC_009615:1553556:155445415544541555344891Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-1170.1
NC_013960:2761353:278221127822112783191981Nitrosococcus halophilus Nc4 chromosome, complete genomesecretion protein HlyD family protein1e-1067.8
NC_014315:1435243:1454424145442414554401017Nitrosococcus watsoni C-113 chromosome, complete genomeHlyD family secretion protein4e-1066.2
NC_017098:1149145:1151963115196311529971035Spirochaeta africana DSM 8902 chromosome, complete genomemultidrug resistance efflux pump9e-1064.7
NC_011027:1153592:115490511549051155828924Chlorobaculum parvum NCIB 8327, complete genomeputative ABC transport system, lipoprotein2e-0963.5
NC_003228:3085793:308579330857933086689897Bacteroides fragilis NCTC 9343, complete genomeputative ABC transport system, lipoprotein3e-0963.2
NC_007614:1633332:1633332163333216344111080Nitrosospira multiformis ATCC 25196 chromosome 1, completeSecretion protein HlyD1e-0860.8
NC_013520:1559000:1563659156365915647051047Veillonella parvula DSM 2008, complete genomesecretion protein HlyD family protein4e-0859.3
NC_016845:5162481:517056951705695171456888Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-0859.3
NC_009648:4359875:436791343679134368800888Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein5e-0859.3
NC_012731:5074000:508209250820925083057966Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-0757.8
NC_011283:105245:113634113634114599966Klebsiella pneumoniae 342 chromosome, complete genomelipoprotein2e-0757.4
NC_013850:109500:118830118830119795966Klebsiella variicola At-22 chromosome, complete genomesecretion protein HlyD family protein2e-0757.4
NC_014307:3240430:324043032404303241368939Ralstonia solanacearum CFBP2957 chromosome, complete genomesecretion protein hlyd-like protein1e-0757.4
NC_009654:2309365:2325448232544823265421095Marinomonas sp. MWYL1, complete genomeRND family efflux transporter MFP subunit1e-0757.4
NC_014013:301184:3225723225723237231152Sphingobium japonicum UT26S chromosome 2, complete genomemultidrug resistance efflux pump2e-0757
NC_007404:1126756:1144110114411011451801071Thiobacillus denitrificans ATCC 25259, complete genomeHlyD family secretion protein1e-0654.3