Pre_GI: BLASTP Hits

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Query: NC_007613:2699500:2710491 Shigella boydii Sb227, complete genome

Start: 2710491, End: 2711834, Length: 1344

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007946:3125577:3138193313819331395361344Escherichia coli UTI89, complete genomeN-acetylmuramoyl-L-alanine amidase AmiC precursor0837
NC_013361:3823347:3836293383629338375461254Escherichia coli O26:H11 str. 11368 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase0813
NC_011745:3197584:3210529321052932117821254Escherichia coli ED1a chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase0813
NC_011742:3057444:3070072307007230713251254Escherichia coli S88 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase0813
NC_008253:2965573:2978391297839129796441254Escherichia coli 536, complete genomeputative amidase0813
NC_010498:3023442:3036388303638830376411254Escherichia coli SMS-3-5, complete genomeN-acetylmuramoyl-L-alanine amidase AmiC0813
NC_007298:3271071:3293633329363332949821350Dechloromonas aromatica RCB, complete genomeCell wall hydrolase/autolysin5e-104378
NC_015276:2804874:2819148281914828204761329Marinomonas mediterranea MMB-1 chromosome, complete genomecell wall hydrolase/autolysin7e-61234
NC_009654:2958316:2979555297955529808831329Marinomonas sp. MWYL1, complete genomeN-acetylmuramoyl-L-alanine amidase2e-60233
NC_004337:2548288:254828825482882549157870Shigella flexneri 2a str. 301, complete genomeN-acetylmuramoyl-l-alanine amidase I5e-57222
NC_004741:2526421:252642125264212527290870Shigella flexneri 2a str. 2457T, complete genomeN-acetylmuramoyl-l-alanine amidase I5e-57222
NC_014500:4257145:4257145425714542588211677Dickeya dadantii 3937 chromosome, complete genomeN-acetylmuramoyl-l-alanine amidase II2e-48194
NC_017328:2586171:258617125861712586794624Shigella flexneri 2002017 chromosome, complete genomeputative N-acetylmuramoyl-L-alanine amidase2e-45183
NC_012691:2614603:2614603261460326161981596Tolumonas auensis DSM 9187, complete genomeN-acetylmuramoyl-L-alanine amidase2e-42174
NC_005061:65861:8349183491847501260Candidatus Blochmannia floridanus, complete genomeN-acetylmuramoyl-L-alanine amidase1e-41171
NC_011146:1998981:2017847201784720191061260Geobacter bemidjiensis Bem, complete genomecell wall hydrolase/autolysin2e-41170
NC_014973:1941500:1960295196029519615721278Geobacter sp. M18 chromosome, complete genomecell wall hydrolase/autolysin2e-40167
NC_014909:86000:8711587115884791365Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase4e-40166
NC_016632:120500:1329301329301342761347Serratia symbiotica str. 'Cinara cedri' chromosome, completeN-acetylmuramoyl-l-alanine amidase II2e-39164
NC_014313:2059933:2059933205993320612041272Hyphomicrobium denitrificans ATCC 51888 chromosome, completecell wall hydrolase/autolysin6e-38159
NC_010519:1802294:1802294180229418035021209Haemophilus somnus 2336 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-37157
NC_016513:1185241:1189805118980511912921488Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeN-acetylmuramoyl-L-alanine amidase9e-37154
NC_013416:875758:8803218803218818081488Aggregatibacter actinomycetemcomitans D11S-1, complete genomeN-acetylmuramoyl-L-alanine amidase1e-36154
NC_020126:2883194:288603228860322886841810Myxococcus stipitatus DSM 14675, complete genomeN-acetylmuramoyl-L-alanine amidase4e-29129
NC_008095:4669947:4670944467094446727431800Myxococcus xanthus DK 1622, complete genomeN-acetylmuramoyl-L-alanine amidase domain protein5e-28125
NC_010424:1563033:1592155159215515944102256Candidatus Desulforudis audaxviator MP104C, complete genomeN-acetylmuramoyl-L-alanine amidase1e-25118
NC_008255:1344674:134540813454081346205798Cytophaga hutchinsonii ATCC 33406, complete genomeN-acetylmuramoyl-L-alanine amidase I5e-25115
NC_000964:3658000:3658149365814936596391491Bacillus subtilis subsp. subtilis str. 168, complete genomeN-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49)2e-22107
NC_007760:3848190:387012238701223870871750Anaeromyxobacter dehalogenans 2CP-C, complete genomeN-acetylmuramoyl-L-alanine amidase1e-21104
NC_007604:2213659:2213659221365922147081050Synechococcus elongatus PCC 7942, complete genomeCell wall hydrolase/autolysin2e-21103
NC_015144:1526669:1526669152666915279791311Weeksella virosa DSM 16922 chromosome, complete genomecell wall hydrolase/autolysin6e-21102
NC_014371:1358615:1369373136937313707041332Prevotella melaninogenica ATCC 25845 chromosome chromosome II,N-acetylmuramoyl-L-alanine amidase7e-21102
NC_015520:3060495:306407430640743064778705Mahella australiensis 50-1 BON chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-20101
NC_015966:2337833:2358239235823923594591221Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomecell wall hydrolase/autolysin3e-20100
NC_015555:2259500:2300952230095223023821431Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeN-acetylmuramoyl-L-alanine amidase9e-2098.6
NC_016751:1623756:1642310164231016436831374Marinitoga piezophila KA3 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-1998.2
NC_015589:1630461:163505816350581635783726Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-1998.2
NC_019970:2551607:2572748257274825741781431Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeN-acetylmuramoyl-L-alanine amidase9e-1892
NC_014209:1910109:191010919101091910789681Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,N-acetylmuramoyl-L-alanine amidase CwlD1e-1791.7
NC_004342:3370310:3393746339374633948371092Leptospira interrogans serovar Lai str. 56601 chromosome I,N-acetylmuramoyl-L-alanine amidase1e-1791.7
NC_011837:238160:266596266596267321726Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-1790.5
NC_009706:238160:266605266605267321717Clostridium kluyveri DSM 555 chromosome, complete genomegermination-specific N-acetylmuramoyl-L-alanine amidase2e-1790.5
NC_016047:2480921:248393824839382484552615Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeN-acetylmuramoyl-L-alanine amidase4e-1789.7
NC_019970:439969:455935455935456609675Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeN-acetylmuramoyl-L-alanine amidase CwlD7e-1789
NC_009697:3659834:366081736608173661521705Clostridium botulinum A str. ATCC 19397 chromosome, completeN-acetylmuramoyl-L-alanine amidase9e-1788.6
NC_014220:2239594:224053722405372241220684Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase CwlD1e-1688.2
NC_003901:2727361:2729681272968127310541374Methanosarcina mazei Go1, complete genomecell surface protein1e-1688.2
NC_011898:851892:866523866523867272750Clostridium cellulolyticum H10, complete genomecell wall hydrolase/autolysin1e-1687.8
NC_016593:868500:8686788686788700241347Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeN-acetylmuramoyl-L-alanine amidase2e-1687.4
NC_009698:3553365:355792635579263558630705Clostridium botulinum A str. Hall chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase3e-1686.7
NC_016077:998741:105235210523521053323972Acidaminococcus intestini RyC-MR95 chromosome, complete genometranscriptional regulator1e-1584.3
NC_016627:2870900:2888618288861828896881071Clostridium clariflavum DSM 19732 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1584
NC_004557:2711702:272737227273722728097726Clostridium tetani E88, complete genomegermination-specific N-acetylmuramoyl-L-alanine amidase2e-1584
NC_016584:233486:254592254592255323732Desulfosporosinus orientis DSM 765 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase9e-1582
NC_014915:2963500:297077229707722971452681Geobacillus sp. Y412MC52 chromosome, complete genomecell wall hydrolase/autolysin1e-1481.3
NC_013411:597235:632480632480633163684Geobacillus sp. Y412MC61, complete genomecell wall hydrolase/autolysin1e-1481.3
NC_009089:117980:123166123166123870705Clostridium difficile 630, complete genomegermination-specific N-acetylmuramoyl-L-alanine amidase2e-1480.9
NC_013316:120759:126866126866127618753Clostridium difficile R20291, complete genomegermination-specific N-acetylmuramoyl-L-alanine amidase2e-1480.5
NC_019908:1043401:104251710425171043449933Brachyspira pilosicoli P43/6/78 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase3e-1480.1
NC_010723:223935:274089274089274751663Clostridium botulinum E3 str. Alaska E43, complete genomeN-acetylmuramoyl-L-alanine amidase CwlD5e-1479.3
UCMB5137:1375622:137628713762871377051765Bacillus atrophaeus UCMB-5137N-acetylmuramoyl-L-alanine amidase6e-1479
NC_016584:1583685:1586858158685815880421185Desulfosporosinus orientis DSM 765 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase9e-1478.6
NC_014328:4249032:426661242666124267328717Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-1378.6
NC_014328:4387303:442589644258964426588693Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase4e-1376.3
NC_019897:329945:329945329945330784840Thermobacillus composti KWC4 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase CwlD6e-1272.4
NC_009328:2905000:292383329238332924537705Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase1e-1171.6
NC_020410:1781884:178188417818841782642759Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeSporulation-specific N-acetylmuramoyl-L-alanine amidase1e-1171.2
NC_013921:1396500:140293514029351403645711Thermoanaerobacter italicus Ab9 chromosome, complete genomecell wall hydrolase/autolysin1e-1171.2
NC_010723:3133302:3141134314113431431912058Clostridium botulinum E3 str. Alaska E43, complete genomesurface protein PspC2e-1170.9
NC_010001:4586000:459873045987304599443714Clostridium phytofermentans ISDg, complete genomecell wall hydrolase/autolysin3e-1170.5
NC_007644:1293701:131535413153541316082729Moorella thermoacetica ATCC 39073, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1170.5
NC_014829:178000:178742178742179461720Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase CwlD2e-1170.5
NC_018704:176088:179814179814180518705Amphibacillus xylanus NBRC 15112, complete genomegermination-specific N-acetylmuramoyl-L-alanine amidase3e-1170.1
NC_009089:1202261:1214547121454712165862040Clostridium difficile 630, complete genomecell surface protein (putative N-acetylmuramoyl-L-alanine amidase)4e-1169.7
NC_012926:727716:7307667307667335732808Streptococcus suis BM407 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase6e-1169.3
NC_012925:1125876:1145568114556811486753108Streptococcus suis P1/7, complete genomeN-acetylmuramoyl-L-alanine amidase5e-1169.3
NC_009442:1216355:1234262123426212373693108Streptococcus suis 05ZYH33 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase5e-1169.3
NC_009922:315870:3336633336633350961434Alkaliphilus oremlandii OhILAs, complete genomeSpoIID/LytB domain5e-1169.3
NC_018664:1573925:158825715882571589231975Clostridium acidurici 9a chromosome, complete genomeputative cell wall amidase LytH7e-1168.9
NC_010723:3133302:3143492314349231457052214Clostridium botulinum E3 str. Alaska E43, complete genomesurface protein PspC8e-1168.6
NC_019978:686362:688393688393689076684Halobacteroides halobius DSM 5150, complete genomeN-acetylmuramoyl-L-alanine amidase1e-1068.2
NC_011726:3205278:3209074320907432108491776Cyanothece sp. PCC 8801, complete genomecell wall hydrolase/autolysin1e-1068.2
NC_013316:1081044:1093266109326610953052040Clostridium difficile R20291, complete genomecell surface protein (putative N-acetylmuramoyl-L-alanine amidase)1e-1068.2
NC_016048:2055199:206947120694712070196726Oscillibacter valericigenes Sjm18-20, complete genomeputative N-acetylmuramoyl-L-alanine amidase2e-1067.4
NC_001263:1378605:1392928139292813940431116Deinococcus radiodurans R1 chromosome 1, complete sequenceN-acetylmuramoyl-L-alanine amidase, putative2e-1067
NC_004193:205278:209362209362210093732Oceanobacillus iheyensis HTE831, complete genomegermination specific N-acetylmuramoyl-L-alanine amidase3e-1066.6
NC_017093:8757291:8758675875867587598261152Actinoplanes missouriensis 431, complete genomeputative N-acetylmuramoyl-L-alanine amidase4e-1066.6
NC_013161:3071105:3087095308709530888701776Cyanothece sp. PCC 8802, complete genomecell wall hydrolase/autolysin1e-0964.7
NC_010718:2460893:247263324726332473553921Natranaerobius thermophilus JW/NM-WN-LF, complete genomecell wall hydrolase/autolysin2e-0963.9
NC_018515:4660808:466437946643794665224846Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase3e-0963.5
NC_014328:180482:1848201848201866311812Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative N-acetylmuramoyl-L-alanine amidase4e-0963.2
NC_014652:801653:831651831651832199549Caldicellulosiruptor hydrothermalis 108 chromosome, completecell wall hydrolase/autolysin5e-0962.8
NC_013406:781308:801375801375802103729Paenibacillus sp. Y412MC10 chromosome, complete genomecell wall hydrolase/autolysin8e-0962.4
NC_011768:1889853:190630319063031907115813Desulfatibacillum alkenivorans AK-01, complete genomecell wall hydrolase/autolysin2e-0860.8
NC_017208:108134:149586149586150299714Bacillus thuringiensis serovar chinensis CT-43 chromosome, completespore-specific N-acetylmuramoyl-L-alanine amidase3e-0860.1
NC_014171:109280:147537147537148250714Bacillus thuringiensis BMB171 chromosome, complete genomespore-specific N-acetylmuramoyl-L-alanine amidase3e-0860.1
NC_008710:703740:7075257075257085501026Borrelia turicatae 91E135, complete genomeN-acetylmuramoyl-L-alanine amidase4e-0859.7
NC_015977:2631789:2648850264885026542105361Roseburia hominis A2-183 chromosome, complete genomeN-acetylmuramidase/lysin8e-0858.9
NC_014363:645397:6753626753626777522391Olsenella uli DSM 7084 chromosome, complete genomecell wall hydrolase/autolysin1e-0758.2
NC_006156:685344:7058667058667068731008Borrelia garinii PBi chromosome linear, complete sequencehypothetical protein1e-0757.8
NC_015711:6796082:681237568123756813253879Myxococcus fulvus HW-1 chromosome, complete genomeputative N-acetylmuramoyl-L-alanine amidase3e-0756.6
NC_020291:5981006:5985561598556159878882328Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeN-acetylmuramoyl-L-alanine amidase1e-0655.1
NC_010673:703816:7100877100877111121026Borrelia hermsii DAH, complete genomeN-acetylmuramoyl-L-alanine amidase2e-0653.9