Pre_GI: BLASTP Hits

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Query: NC_007613:2376974:2379187 Shigella boydii Sb227, complete genome

Start: 2379187, End: 2380119, Length: 933

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010658:2529033:253125525312552532187933Shigella boydii CDC 3083-94, complete genomehypothetical protein1e-152539
CU928145:2655989:266427426642742665206933Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein2e-152538
CP002185:2608000:261704826170482617980933Escherichia coli W, complete genomepredicted inner membrane protein2e-152538
NC_002655:3260500:326185632618563262788933Escherichia coli O157:H7 EDL933, complete genomeputative transport2e-152538
NC_002695:3189425:319190031919003192832933Escherichia coli O157:H7 str. Sakai, complete genomeputative transport2e-152538
NC_011750:2585015:258749025874902588422933Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-152538
CP002516:1475521:148787714878771488809933Escherichia coli KO11, complete genomeformate/nitrite transporter2e-152538
NC_011748:2655989:266427426642742665206933Escherichia coli 55989, complete genomeconserved hypothetical protein; putative inner membrane protein2e-152538
NC_011415:2732000:274042327404232741355933Escherichia coli SE11 chromosome, complete genomeputative transport protein2e-152538
NC_013361:3254000:326312132631213264053933Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-152538
NC_013941:2928000:293296629329662933898933Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-152538
NC_016902:1475521:148787714878771488809933Escherichia coli KO11FL chromosome, complete genomeformate/nitrite transporter2e-152538
NC_011742:2489000:249211124921112493043933Escherichia coli S88 chromosome, complete genomehypothetical protein3e-152537
NC_007946:2593500:259628925962892597221933Escherichia coli UTI89, complete genomeputative transport3e-152537
NC_008563:2565876:256897925689792569911933Escherichia coli APEC O1, complete genomeputative transport protein3e-152537
NC_009800:2505872:250692125069212507853933Escherichia coli HS, complete genomehypothetical protein6e-151533
NC_012967:2409500:240974324097432410675933Escherichia coli B str. REL606 chromosome, complete genomeputative inner membrane protein6e-151533
NC_012759:2342986:234912823491282350060933Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein3e-150531
AC_000091:2462461:247074724707472471679933Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein3e-150531
NC_010473:2548946:255508825550882556020933Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein3e-150531
NC_000913:2455037:246332324633232464255933Escherichia coli K12, complete genomepredicted inner membrane protein3e-150531
NC_013716:2898434:2902857290285729039991143Citrobacter rodentium ICC168, complete genomehypothetical protein2e-139495
NC_004631:531254:543995543995544936942Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-136484
NC_003198:2453074:245977624597762460717942Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-136484
NC_016832:531208:543949543949544890942Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yfdC5e-136484
NC_012125:1360593:137446613744661375407942Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein7e-136483
NC_016831:531404:544195544195545136942Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-135482
NC_011294:2492168:249887024988702499811942Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-135482
NC_011205:2621415:262597226259722626913942Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-135482
NC_011274:2483038:248974124897412490682942Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein2e-135482
NC_006511:529424:542166542166543107942Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-135481
NC_011147:529458:542200542200543141942Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-135481
NC_011083:2542876:254957725495772550518942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YfdC3e-135481
NC_009436:3117661:312438731243873125328942Enterobacter sp. 638, complete genometransport3e-133474
NC_015968:3277217:328402732840273284956930Enterobacter asburiae LF7a chromosome, complete genomeformate/nitrite transporter1e-128459
NC_015663:5253242:525990952599095260820912Enterobacter aerogenes KCTC 2190 chromosome, complete genomeformate/nitrite transporter2e-113408
NC_014306:3524980:352996835299683530885918Erwinia billingiae Eb661, complete genomePutative transport protein2e-103375
NC_014839:253961:295463295463296368906Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceformate/nitrite transporter4e-100364
NC_015224:3291736:330078233007823301693912Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative inner membrane protein1e-97356
NC_016818:1291665:130562513056251306542918Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeformate/nitrite transporter family protein1e-95349
NC_015061:1251905:127252312725231273440918Rahnella sp. Y9602 chromosome, complete genomeformate/nitrite transporter2e-94345
NC_012917:3198000:320294832029483203868921Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeformate/nitrite transporter2e-94345
NC_020209:4312892:434655043465504347440891Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-68259
NC_010501:1286971:129339112933911294287897Pseudomonas putida W619, complete genometransporter, formate/nitrite family8e-68257
NC_015873:2197412:221363522136352214492858Megasphaera elsdenii DSM 20460, complete genomeformate/nitrate transporter4e-38158
NC_014299:82584:132177132177133133957Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceformate/nitrite transporter1e-1997.4
NC_007005:5500196:552150555215055522320816Pseudomonas syringae pv. syringae B728a, complete genomeFormate/nitrite transporter2e-0653.5
NC_005773:5310339:532528553252855326100816Pseudomonas syringae pv. phaseolicola 1448A, complete genomeFormate transporter8e-0651.2