Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1375999 Shigella boydii Sb227, complete genome

Start: 1375999, End: 1376895, Length: 897

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020181:5130513:517540251754025176310909Enterobacter aerogenes EA1509E, complete genomeBaseplate assembly protein J2e-82305
NC_003198:4453457:448534944853494486257909Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable phage baseplate assembly protein3e-81301
NC_016845:1773416:179519917951991796107909Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,baseplate assembly protein J4e-79295
NC_015061:1598920:162645116264511627359909Rahnella sp. Y9602 chromosome, complete genomeBaseplate J family protein9e-78290
NC_014562:1698253:171850717185071719415909Pantoea vagans C9-1 chromosome, complete genomeBaseplate assembly protein J (GpJ)1e-77290
NC_017047:1551836:157789315778931578801909Rahnella aquatilis HX2 chromosome, complete genomebaseplate J family protein4e-77288
NC_020064:871338:889447889447890355909Serratia marcescens FGI94, complete genomephage-related baseplate assembly protein7e-77287
NC_009648:3803622:381442738144273815335909Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage baseplate assembly protein7e-77287
NC_016818:1605918:163023416302341631142909Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage-related baseplate assembly protein6e-77287
NC_012967:2105251:210864321086432109512870Escherichia coli B str. REL606 chromosome, complete genomebaseplate assembly protein J7e-76283
NC_014306:103545:128481128481129392912Erwinia billingiae Eb661, complete genomeBaseplate J family protein8e-74277
NC_014228:3022903:303779130377913038699909Xenorhabdus nematophila ATCC 19061, complete genomeBaseplate assembly protein J (GpJ)1e-73276
NC_012962:4942000:494676649467664947680915Photorhabdus asymbiotica, complete genomeprobable bacteriophage baseplate assembly protein2e-72272
NC_014837:3739408:376287637628763763790915Pantoea sp. At-9b chromosome, complete genomeBaseplate J family protein6e-66251
NC_020209:3262000:328501132850113285922912Pseudomonas poae RE*1-1-14, complete genomebaseplate assembly protein J (GpJ)5e-65248
NC_012724:1892000:191329419132941914202909Burkholderia glumae BGR1 chromosome 1, complete genomeBaseplate J-like protein3e-61235
NC_003919:3113343:311497831149783115868891Xanthomonas axonopodis pv. citri str. 306, complete genomephage-related baseplate assembly protein4e-53208
NC_007712:1997010:201782120178212018624804Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-50199
NC_012751:1988280:199851919985191999400882Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completephage baseplate J-like protein1e-46187
CP002797:1960000:197456119745611975481921Escherichia coli NA114, complete genomeputative baseplate assembly protein1e-38160
NC_012416:753500:770033770033770830798Wolbachia sp. wRi, complete genomebaseplate assembly protein J, putative3e-32139
NC_011740:2737467:275788327578832758803921Escherichia fergusonii ATCC 35469, complete genomeBaseplate assembly protein J (GpJ)8e-30130
NC_010658:1772994:177299417729941773891898Shigella boydii CDC 3083-94, complete genome1e-26120
NC_017511:852260:8605958605958616501056Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomePutative baseplate protein phage associated protein7e-26117
NC_011035:933269:944184944184944978795Neisseria gonorrhoeae NCCP11945 chromosome, complete genomePutative baseplate protein phage associated protein8e-24110
NC_012416:1332409:134159513415951342404810Wolbachia sp. wRi, complete genomebaseplate assembly protein J, putative7e-23108
NC_012416:1079661:109301410930141093805792Wolbachia sp. wRi, complete genomebaseplate assembly protein J, putative6e-23108
NC_012416:573202:586555586555587346792Wolbachia sp. wRi, complete genomebaseplate assembly protein J, putative6e-23108
NC_002978:618723:631112631112631903792Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage LambdaW5, baseplate assembly protein J, putative8e-23107
NC_010981:425387:449162449162449947786Wolbachia pipientis, complete genomebaseplate assembly protein GpJ2e-22106
NC_010981:314745:324446324446325231786Wolbachia pipientis, complete genomebaseplate assembly protein GpJ2e-22106
NC_020301:853267:877852877852878733882Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomephage baseplate assembly protein GpJ2e-21103
NC_010981:314745:353672353672354457786Wolbachia pipientis, complete genomebaseplate assembly protein GpJ4e-21102
NC_010981:242500:250819250819251610792Wolbachia pipientis, complete genomebaseplate assembly protein GpJ3e-21102
NC_015873:1241354:1243765124376512448801116Megasphaera elsdenii DSM 20460, complete genomeputative bacteriophage baseplate assembly protein2e-1686.7
NC_015276:2023663:2027637202763720286381002Marinomonas mediterranea MMB-1 chromosome, complete genomeBaseplate J family protein5e-1685.5
NC_011420:1178762:1178762117876211798681107Rhodospirillum centenum SW, complete genomephage baseplate J-like protein, putative1e-1480.9
NC_006300:60484:7874878748798451098Mannheimia succiniciproducens MBEL55E, complete genomehypothetical protein3e-1479.3
NC_017068:1732857:1734860173486017359781119Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative baseplate protein5e-1272
NC_007434:3973145:397766839776683978012345Burkholderia pseudomallei 1710b chromosome I, complete sequencephage baseplate assembly protein1e-0963.9
NC_014632:1112733:1119139111913911202361098Ilyobacter polytropus DSM 2926 chromosome, complete genomebaseplate J family protein1e-0963.9
NC_009076:3564500:357017635701763570502327Burkholderia pseudomallei 1106a chromosome I, complete sequencebacteriophage baseplate assembly protein J2e-0963.2
NC_014376:916063:9267819267819279291149Clostridium saccharolyticum WM1 chromosome, complete genomeBaseplate J family protein5e-0962
NC_014307:1765230:1780610178061017817161107Ralstonia solanacearum CFBP2957 chromosome, complete genomebacteriophage baseplate assembly protein2e-0757
NC_010382:3643288:3647700364770036488301131Lysinibacillus sphaericus C3-41, complete genomehypothetical protein4e-0755.5
NC_007519:3355768:3356201335620133573641164Desulfovibrio alaskensis G20 chromosome, complete genomebaseplate assembly protein1e-0653.9
NC_011002:564654:5776315776315787821152Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative phage baseplate assembly protein gpJ1e-0653.9
NC_014633:8500:1668516685178061122Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencebaseplate J family protein2e-0653.5
NC_009850:1651410:1665523166552316666981176Arcobacter butzleri RM4018, complete genomebaseplate assembly protein J, putative3e-0652.8
NC_014311:1507945:151412015141201514335216Ralstonia solanacearum PSI07 chromosome, complete genome4e-0652.4