Pre_GI: BLASTP Hits

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Query: NC_007613:1038000:1053811 Shigella boydii Sb227, complete genome

Start: 1053811, End: 1054188, Length: 378

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:2045000:204973820497382050151414Shigella flexneri 5 str. 8401, complete genomehypothetical protein5e-70262
NC_009801:2159123:216842221684222168835414Escherichia coli E24377A, complete genometransthyretin family protein5e-70262
NC_002695:2655445:266349526634952663908414Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-70262
NC_017328:2090679:209667220966722097085414Shigella flexneri 2002017 chromosome, complete genomeTransthyretin5e-70262
NC_012967:1967675:197695519769551977368414Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein5e-70262
NC_008253:1938975:194375019437501944163414Escherichia coli 536, complete genometransthyretin-like protein precursor5e-70262
NC_004431:2185750:219059421905942191007414Escherichia coli CFT073, complete genomeTransthyretin-like protein precursor5e-70262
NC_004741:2009769:201774720177472018160414Shigella flexneri 2a str. 2457T, complete genomehypothetical protein5e-70262
NC_009800:2049346:205805620580562058469414Escherichia coli HS, complete genometransthyretin family protein5e-70262
NC_004337:2035945:204107520410752041488414Shigella flexneri 2a str. 301, complete genomehypothetical protein5e-70262
AP010958:2272919:227810722781072278520414Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein5e-70262
NC_008563:2041345:204620520462052046618414Escherichia coli APEC O1, complete genomehypothetical protein5e-70262
NC_016822:2201388:221554222155422215955414Shigella sonnei 53G, complete genomehydroxyisourate hydrolase5e-70262
NC_013941:2425233:243328324332832433696414Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransthyretin-like protein precursor5e-70262
NC_013353:2272919:227810722781072278520414Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-70262
NC_013008:2561586:257008725700872570500414Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein5e-70262
NC_011741:2091249:210066221006622101075414Escherichia coli IAI1 chromosome, complete genomehypothetical protein5e-70262
NC_011415:2248417:225689522568952257308414Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-70262
NC_011353:2563056:257110625711062571519414Escherichia coli O157:H7 str. EC4115 chromosome, complete genometransthyretin family protein5e-70262
CU928160:2091249:210066221006622101075414Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein5e-70262
NC_002655:2730659:273871027387102739123414Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-70262
NC_010498:1210145:122003012200301220443414Escherichia coli SMS-3-5, complete genometransthyretin family protein5e-70262
CP002185:2181936:219036721903672190780414Escherichia coli W, complete genomeconserved protein1e-69261
CP002516:1902431:191507519150751915488414Escherichia coli KO11, complete genomehydroxyisourate hydrolase1e-69261
NC_016902:1902431:191507519150751915488414Escherichia coli KO11FL chromosome, complete genomehydroxyisourate hydrolase1e-69261
NC_013364:2522888:253091525309152531328414Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-69260
AC_000091:2027648:204109320410932041506414Escherichia coli W3110 DNA, complete genomehypothetical protein5e-69259
NC_000913:2028472:203698020369802037393414Escherichia coli K12, complete genomehypothetical protein5e-69259
NC_010473:2119480:212798821279882128401414Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein5e-69259
NC_012759:1920955:192946319294631929876414Escherichia coli BW2952 chromosome, complete genomehypothetical protein5e-69259
NC_012947:1769438:179796817979681798381414Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehydroxyisourate hydrolase5e-69259
NC_017046:1127325:114108611410861141442357Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein6e-49192
NC_006511:1808815:181346118134611813871411Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-48189
NC_010102:2020762:202317620231762023586411Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-48189
NC_011083:1173802:118917911891791189589411Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hydroxyisourate hydrolase4e-48189
NC_011149:1035990:105444310544431054853411Salmonella enterica subsp. enterica serovar Agona str. SL483,hydroxyisourate hydrolase4e-48189
NC_003197:1170746:118445311844531184863411Salmonella typhimurium LT2, complete genomehypothetical protein4e-48189
NC_016831:1950650:195307519530751953485411Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein4e-48189
NC_011294:1048223:106230110623011062711411Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein4e-48189
NC_011274:1057887:107159010715901072000411Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein4e-48189
NC_011205:1147556:116295011629501163360411Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hydroxyisourate hydrolase4e-48189
NC_010067:1829041:183125618312561831666411Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-48189
NC_011080:1166951:118678911867891187199411Salmonella enterica subsp. enterica serovar Newport str. SL254,hydroxyisourate hydrolase4e-48189
NC_011147:1802535:180864418086441809054411Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-48189
NC_016832:1880174:188234418823441882754411Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,5-hydroxyisourate hydrolase3e-48189
NC_004631:1881214:188549418854941885904411Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-48189
NC_003198:1078113:109490910949091095319411Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-48189
NC_011094:1127983:114312411431241143534411Salmonella enterica subsp. enterica serovar Schwarzengrund strhydroxyisourate hydrolase4e-48189
NC_016863:1128381:114208811420881142498411Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein4e-48189
NC_016860:1168431:118213811821381182548411Salmonella enterica subsp. enterica serovar Typhimurium strhydroxyisourate hydrolase4e-48189
NC_016857:1126693:114077511407751141185411Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/745-hydroxyisourate hydrolase4e-48189
NC_016856:1128715:114279711427971143207411Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein4e-48189
NC_016810:1126693:114077511407751141185411Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-48189
NC_012125:2687980:269040526904052690815411Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein4e-48189
NC_014562:1402863:140598414059841406406423Pantoea vagans C9-1 chromosome, complete genomeTransthyretin-like protein precursor4e-35146
NC_016845:1285435:133991313399131340314402Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-34142
NC_006856:95830:120468120468120878411Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein3e-33140
NC_015968:74124:783437834378753411Enterobacter asburiae LF7a chromosome, complete genomehydroxyisourate hydrolase2e-32137
NC_021066:5342127:534758453475845347985402Raoultella ornithinolytica B6, complete genomehydroxyisourate hydrolase6e-32135
NC_002696:2829002:283278228327822833129348Caulobacter crescentus CB15, complete genomehypothetical protein2e-1891.3
NC_014100:1144463:116135211613521161699348Caulobacter segnis ATCC 21756 chromosome, complete genomehydroxyisourate hydrolase2e-1787.4
NC_008043:499399:501014501014501370357Silicibacter sp. TM1040 mega plasmid, complete sequenceTransthyretin3e-1787
NC_014666:7222000:723747472374747237800327Frankia sp. EuI1c chromosome, complete genomehydroxyisourate hydrolase3e-1787
NC_016513:1400899:140680914068091407222414Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehydroxyisourate hydrolase7e-1785.9
NC_010338:4015928:401974340197434020090348Caulobacter sp. K31, complete genomehydroxyisourate hydrolase3e-1580.5
NC_015968:1618862:163805716380571638380324Enterobacter asburiae LF7a chromosome, complete genomehydroxyisourate hydrolase6e-1476.3
NC_016514:1627664:164537316453731645696324Enterobacter cloacae EcWSU1 chromosome, complete genome5-hydroxyisourate hydrolase1e-1375.1
NC_015559:1478114:147955014795501479906357Marinomonas posidonica IVIA-Po-181 chromosome, complete genomehydroxyisourate hydrolase2e-1167.8
NC_011000:3362382:337642533764253376760336Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transthyretin-like protein3e-1063.9
NC_011000:3362382:337680833768083377329522Burkholderia cenocepacia J2315 chromosome 1, complete sequencetransthyretin-like protein5e-1063.2
NC_008010:449652:453688453688454062375Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceTransthyretin2e-0960.8
NC_010794:2157920:216941321694132169760348Methylacidiphilum infernorum V4, complete genomeTransthyretin-like protein3e-0857