Pre_GI: BLASTP Hits

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Query: NC_007608:97092:116804 Shigella boydii Sb227 plasmid pSB4_227, complete sequence

Start: 116804, End: 118258, Length: 1455

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:175200:1990601990602005141455Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceOspC20991
NC_007607:87000:1173141173141187681455Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceOspC30902
NC_010660:86445:8802788027894811455Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceOspC30900
NC_015761:1970042:1980567198056719824561890Salmonella bongori NCTC 12419, complete genomevirulence protein2e-1584.3
NC_004605:1385444:140619014061901406597408Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative OspC21e-0861.6