Pre_GI: BLASTP Hits

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Query: NC_007608:97092:109025 Shigella boydii Sb227 plasmid pSB4_227, complete sequence

Start: 109025, End: 109585, Length: 561

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:175200:189005189005189616612Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencefertility inhibition protein FinO4e-87320
NC_004851:191709:204898204898205458561Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceFinO, putative fertility inhibition protein1e-86318
NC_017319:192482:204730204730205341612Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceFinO, putative fertility inhibition protein3e-86317
NC_007607:87000:102172102172102732561Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceFinO3e-85314
NC_011749:34056:546105461055170561Escherichia coli UMN026 plasmid p1ESCUM, complete sequenceconjugal transfer fertility inhibition protein FinO2e-82304
NC_016846:24500:452844528445877594Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,fertility inhibition protein1e-23109
NC_009378:106193:112239112239112958720Yersinia pestis Pestoides F plasmid MT, complete sequenceconjugal transfer fertility inhibition protein FinO2e-1375.1
NC_012751:1296877:130255313025531303104552Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeconjugal transfer fertility inhibition protein1e-1065.9
NC_011748:4950723:496455449645544964898345Escherichia coli 55989, complete genomeputative conjugation inhibition protein, immunity protein3e-0858.2
CU928145:4950723:496455449645544964898345Escherichia coli 55989 chromosome, complete genomeputative conjugation inhibition protein, immunity protein3e-0858.2
NC_011748:299080:304893304893305450558Escherichia coli 55989, complete genomeActivator of ProP osmoprotectant transporter8e-0856.6
CU928145:299080:304893304893305450558Escherichia coli 55989 chromosome, complete genomeActivator of ProP osmoprotectant transporter8e-0856.6
NC_011083:4547825:458133045813304581674345Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,ProQ family protein2e-0755.5