Pre_GI: BLASTP Hits

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Query: NC_007607:87000:104290 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 104290, End: 104520, Length: 231

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:175200:190143190143190643501Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence7e-38155
NC_007608:97092:110172110172110633462Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein8e-38155
NC_011749:34056:535635356354099537Escherichia coli UMN026 plasmid p1ESCUM, complete sequencenuclease2e-37154
NC_017319:192482:207489207489207656168Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein1e-1788.2
NC_004851:191709:207606207606207773168Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein1e-1788.2
NC_008786:4070753:407453540745354074996462Verminephrobacter eiseniae EF01-2, complete genomenuclease (SNase domain protein)4e-1063.5
NC_012560:5276000:528070452807045281261558Azotobacter vinelandii DJ, complete genomeStaphylococcus nuclease (SNase-like)5e-0959.7
NC_021150:5234000:523859652385965239153558Azotobacter vinelandii CA6, complete genomenuclease5e-0959.7
NC_013416:1588369:159322915932291593729501Aggregatibacter actinomycetemcomitans D11S-1, complete genomeprotein ParB2e-0857.8
NC_016513:1924242:192915919291591929659501Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeprotein ParB2e-0857.8
NC_014972:210500:217951217951218613663Desulfobulbus propionicus DSM 2032 chromosome, complete genomenuclease2e-0857.8
NC_016616:760145:768659768659769195537Dechlorosoma suillum PS chromosome, complete genomemicrococcal nuclease-like nuclease8e-0855.8
NC_008255:1344674:136424313642431364743501Cytophaga hutchinsonii ATCC 33406, complete genomenuclease1e-0755.5
NC_005070:1486496:152121015212101521866657Synechococcus sp. WH 8102, complete genomeStaphylococcal nuclease homologue1e-0755.5
NC_013132:782846:798974798974799489516Chitinophaga pinensis DSM 2588, complete genomenuclease (SNase domain protein)1e-0755.1
NC_017322:1260526:126853212685321269194663Sinorhizobium meliloti BL225C chromosome, complete genomenuclease2e-0651.6
NC_012796:4693500:472231247223124722971660Desulfovibrio magneticus RS-1, complete genomeputative nuclease2e-0650.8
NC_012918:2758775:279392827939282794467540Geobacter sp. M21 chromosome, complete genomenuclease3e-0650.4
NC_009715:1829978:186455318645531864999447Campylobacter curvus 525.92 chromosome, complete genomeATP-dependent hsl protease ATP-binding subunit HslU9e-0648.9