Pre_GI: BLASTP Hits

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Query: NC_007606:3842708:3857921 Shigella dysenteriae Sd197, complete genome

Start: 3857921, End: 3858679, Length: 759

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:4686971:469007146900714690829759Shigella sonnei 53G, complete genomecarbon-phosphorus lyase complex accessory protein3e-128457
NC_002655:5194804:519918351991835199941759Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism3e-128457
NC_002695:5164819:516919851691985169956759Escherichia coli O157:H7 str. Sakai, complete genomePhnP3e-128457
NC_007384:4530000:453314445331444533902759Shigella sonnei Ss046, complete genomephosphonate metabolism3e-128457
NC_011353:5240020:524439852443985245156759Escherichia coli O157:H7 str. EC4115 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein3e-128457
NC_013008:5196080:520045952004595201217759Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein3e-128457
NC_013941:5013695:501806550180655018823759Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate utilization protein3e-128457
NC_011750:4719477:472261247226124723370759Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein6e-128456
NC_010498:4656716:465984146598414660599759Escherichia coli SMS-3-5, complete genomephosphonate utilization protein2e-127455
NC_000913:4307471:431236743123674313125759Escherichia coli K12, complete genomecarbon-phosphorus lyase complex accessory protein1e-127455
NC_010473:4409492:441272944127294413487759Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex accessory protein1e-127455
CP002516:4431235:444549644454964446254759Escherichia coli KO11, complete genomephosphonate metabolism protein PhnP1e-127455
AC_000091:4313167:431902243190224319780759Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex accessory protein1e-127455
NC_012759:4247865:425110242511024251860759Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-127455
NC_012947:4106031:412018441201844120942759Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecarbon-phosphorus lyase complex accessory protein1e-127455
NC_016902:4431235:444549644454964446254759Escherichia coli KO11FL chromosome, complete genomephosphonate metabolism protein PhnP1e-127455
NC_007613:4156841:416352641635264164284759Shigella boydii Sb227, complete genomephosphonate metabolism1e-127455
NC_012967:4289929:429316642931664293924759Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-127455
NC_008563:4656000:466089146608914661649759Escherichia coli APEC O1, complete genomePhnP, carbon-phosphorus lyase complex accessory protein5e-127453
NC_011742:4569683:457541945754194576177759Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein5e-127453
NC_010468:4305105:431885943188594319617759Escherichia coli ATCC 8739, complete genomephosphonate metabolism5e-127453
NC_011751:4795928:480045048004504801208759Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein7e-127452
NC_004431:4867648:487338448733844874142759Escherichia coli CFT073, complete genomePhnP protein1e-126452
NC_008253:4541915:454695045469504547708759Escherichia coli 536, complete genomePhnP protein2e-125448
CU928160:4395156:439825643982564399014759Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-124446
CU928145:4695932:469903246990324699790759Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-124446
NC_011748:4695932:469903246990324699790759Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex accessory protein1e-124446
NC_009800:4332229:433891443389144339672759Escherichia coli HS, complete genomephosphonate utilization protein1e-124446
NC_011415:4582388:458562645856264586384759Escherichia coli SE11 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-124446
NC_011741:4395156:439825643982564399014759Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex accessory protein1e-124446
NC_013364:5040268:504695350469535047711759Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex accessory protein PhnP1e-124446
AP010958:5022196:502543350254335026191759Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex accessory protein PhnP2e-124445
NC_013353:5022196:502543350254335026191759Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex accessory protein PhnP2e-124445
CP002185:4566150:457283545728354573593759Escherichia coli W, complete genomecarbon-phosphorus lyase complex accessory protein2e-124445
NC_009801:4643000:464623046462304646988759Escherichia coli E24377A, complete genomephosphonate utilization protein2e-124445
NC_012917:569856:571603571603572400798Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephosphonate metabolism protein PhnP4e-58224
NC_008740:2563278:256749525674952568250756Marinobacter aquaeolei VT8, complete genomebeta-lactamase domain protein1e-55216
NC_007520:2305610:230735023073502308117768Thiomicrospira crunogena XCL-2, complete genomeBeta-lactamase-like1e-51202
NC_008740:257434:260727260727261512786Marinobacter aquaeolei VT8, complete genomebeta-lactamase domain protein5e-51201
NC_008781:2655071:265968926596892660465777Polaromonas naphthalenivorans CJ2, complete genomebeta-lactamase domain protein4e-50197
NC_011770:1811874:181187418118741812644771Pseudomonas aeruginosa LESB58, complete genomeputative phosphonate metabolism protein9e-48190
NC_008463:1756434:175814517581451758915771Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative phosphonate metabolism protein9e-48190
NC_018870:115982:125766125766126554789Thermacetogenium phaeum DSM 12270 chromosome, complete genomebeta-lactamase-like protein1e-1583.6
NC_015690:4592582:460843446084344609252819Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein7e-0961.2
NC_016935:4326644:434857643485764349394819Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein9e-0960.8
NC_011146:382719:407647407647408402756Geobacter bemidjiensis Bem, complete genomebeta-lactamase domain protein3e-0859.3
NC_002939:2697767:270262127026212703376756Geobacter sulfurreducens PCA, complete genomemetallo-beta-lactamase family protein3e-0755.5
NC_016622:1599681:163097816309781631787810Azospirillum lipoferum 4B, complete genomeputative Metal-dependent hydrolase1e-0550.4