Pre_GI: BLASTP Hits

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Query: NC_007606:3842708:3853501 Shigella dysenteriae Sd197, complete genome

Start: 3853501, End: 3854346, Length: 846

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013008:5196080:520487752048775205722846Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex subunit2e-165581
NC_011353:5240020:524881652488165249661846Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate metabolism protein PhnJ2e-165581
NC_002695:5164819:517361651736165174461846Escherichia coli O157:H7 str. Sakai, complete genomePhnJ2e-165581
NC_009800:4332229:434333143433314344176846Escherichia coli HS, complete genomephosphonate metabolism protein PhnJ4e-165580
NC_011748:4695932:470351547035154704360846Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex subunit4e-165580
AP010958:5022196:502985050298505030695846Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex subunit PhnJ4e-165580
CU928145:4695932:470351547035154704360846Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex subunit4e-165580
NC_013353:5022196:502985050298505030695846Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex subunit PhnJ4e-165580
NC_013941:5013695:502248250224825023327846Escherichia coli O55:H7 str. CB9615 chromosome, complete genomePhnJ protein4e-165580
CP002185:4566150:457725245772524578097846Escherichia coli W, complete genomecarbon-phosphorus lyase complex subunit6e-165579
NC_000913:4307471:431678443167844317629846Escherichia coli K12, complete genomecarbon-phosphorus lyase complex subunit6e-165579
NC_010473:4409492:441714644171464417991846Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex subunit6e-165579
AC_000091:4313167:432343943234394324284846Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex subunit6e-165579
CP002516:4431235:444099244409924441837846Escherichia coli KO11, complete genomephosphonate metabolism PhnJ6e-165579
NC_011415:4582388:459004345900434590888846Escherichia coli SE11 chromosome, complete genomephosphonate metabolism protein6e-165579
NC_012759:4247865:425551942555194256364846Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex subunit6e-165579
NC_016902:4431235:444099244409924441837846Escherichia coli KO11FL chromosome, complete genomephosphonate metabolism PhnJ6e-165579
CU928160:4395156:440267344026734403518846Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-164578
NC_011751:4795928:480486748048674805712846Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-164578
NC_007613:4156841:416795841679584168803846Shigella boydii Sb227, complete genomePhnJ1e-164578
NC_009801:4643000:465064746506474651492846Escherichia coli E24377A, complete genomephosphonate metabolism protein PhnJ1e-164578
NC_004431:4867648:487780148778014878730930Escherichia coli CFT073, complete genomePhnJ protein2e-164578
NC_011750:4719477:472709747270974727942846Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-164578
NC_010468:4305105:431435543143554315200846Escherichia coli ATCC 8739, complete genomephosphonate metabolism PhnJ1e-164578
NC_011741:4395156:440267344026734403518846Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-164578
NC_002655:5194804:520360152036015204446846Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism1e-164578
NC_013364:5040268:505137050513705052215846Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex subunit PhnJ1e-164578
NC_012967:4289929:429758342975834298428846Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-164578
NC_012947:4106031:411568041156804116525846Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate metabolism PhnJ1e-164578
NC_011742:4569683:457983645798364580681846Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-164578
NC_010498:4656716:466425846642584665103846Escherichia coli SMS-3-5, complete genomephosphonate metabolism protein PhnJ6e-164576
NC_016822:4686971:469448846944884695333846Shigella sonnei 53G, complete genomephosphonate metabolism protein6e-164576
NC_007384:4530000:453756145375614538406846Shigella sonnei Ss046, complete genomephosphonate metabolism6e-164576
NC_008253:4541915:455136745513674552212846Escherichia coli 536, complete genomePhnJ protein3e-163574
NC_016818:546805:547596547596548471876Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative enzyme of phosphonate metabolism2e-146518
NC_014562:1935088:193424719342471935095849Pantoea vagans C9-1 chromosome, complete genomeProtein phnJ9e-143506
NC_018645:3719302:374246837424683743307840Desulfobacula toluolica Tol2, complete genomephopsphonate metabolism protein,C-P lyase subunit PhnJ6e-117420
NC_008786:3291700:331148333114833312463981Verminephrobacter eiseniae EF01-2, complete genomephosphonate metabolism PhnJ1e-114412
NC_011761:2031876:203297020329702033794825Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completephosphonate metabolism protein PhnJ2e-99362
NC_011206:1917408:191850219185021919326825Acidithiobacillus ferrooxidans ATCC 53993, complete genomephosphonate metabolism PhnJ2e-99362
NC_021182:3525523:353675535367553537606852Clostridium pasteurianum BC1, complete genomeputative enzyme of phosphonate metabolism1e-87322
NC_015391:504227:511296511296512165870Carnobacterium sp. 17-4 chromosome, complete genomeprotein PhnJ8e-83306
NC_008312:7635217:764159076415907642537948Trichodesmium erythraeum IMS101, complete genomephosphonate metabolism PhnJ7e-83306
NC_008740:257434:256538256538257437900Marinobacter aquaeolei VT8, complete genomephosphonate metabolism PhnJ7e-82303
NC_016641:4653889:466435146643514665235885Paenibacillus terrae HPL-003 chromosome, complete genomephosphonate metabolism PhnJ1e-81302
NC_008740:2563278:256327825632782564186909Marinobacter aquaeolei VT8, complete genomephosphonate metabolism PhnJ1e-77290