Pre_GI: BLASTP Hits

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Query: NC_007606:3842708:3852444 Shigella dysenteriae Sd197, complete genome

Start: 3852444, End: 3853508, Length: 1065

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:5013695:5023320502332050243841065Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate metabolism protein PhnI0681
NC_013008:5196080:5205715520571552067791065Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex subunit0681
NC_011353:5240020:5249654524965452507181065Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate metabolism protein PhnI0681
NC_002655:5194804:5204439520443952055031065Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism0681
NC_002695:5164819:5174454517445451755181065Escherichia coli O157:H7 str. Sakai, complete genomePhnI0681
CU928160:4395156:4403511440351144045751065Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit0679
NC_011741:4395156:4403511440351144045751065Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit0679
AP010958:5022196:5030688503068850317521065Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex subunit PhnI0679
NC_013353:5022196:5030688503068850317521065Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex subunit PhnI0679
NC_009801:4643000:4651485465148546525491065Escherichia coli E24377A, complete genomephosphonate metabolism protein PhnI0677
NC_013364:5040268:5052208505220850532721065Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex subunit PhnI0677
NC_011748:4695932:4704353470435347054171065Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex subunit0677
CU928145:4695932:4704353470435347054171065Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex subunit0677
NC_007384:4530000:4538399453839945394631065Shigella sonnei Ss046, complete genomephosphonate metabolism0677
NC_016822:4686971:4695326469532646963901065Shigella sonnei 53G, complete genomephosphonate metabolism protein0677
NC_010498:4656716:4665096466509646661601065Escherichia coli SMS-3-5, complete genomephosphonate metabolism protein PhnI0677
NC_008253:4541915:4552205455220545532691065Escherichia coli 536, complete genomePhnI protein0677
NC_011750:4719477:4727935472793547289991065Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex subunit0677
NC_012967:4289929:4298421429842142994851065Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex subunit0676
NC_012947:4106031:4114623411462341156871065Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate metabolism0676
NC_010468:4305105:4313298431329843143621065Escherichia coli ATCC 8739, complete genomephosphonate metabolism0675
CP002185:4566150:4578090457809045791541065Escherichia coli W, complete genomecarbon-phosphorus lyase complex subunit0674
NC_011415:4582388:4590881459088145919451065Escherichia coli SE11 chromosome, complete genomephosphonate metabolism protein0674
NC_004431:4867648:4878639487863948797091071Escherichia coli CFT073, complete genomePhnI protein0674
NC_009800:4332229:4344169434416943452331065Escherichia coli HS, complete genomephosphonate metabolism protein PhnI0674
NC_011751:4795928:4805705480570548067691065Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex subunit0672
AC_000091:4313167:4324277432427743253411065Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex subunit0672
CP002516:4431235:4439935443993544409991065Escherichia coli KO11, complete genomephosphonate metabolism0672
NC_000913:4307471:4317622431762243186861065Escherichia coli K12, complete genomecarbon-phosphorus lyase complex subunit0672
NC_010473:4409492:4417984441798444190481065Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex subunit0672
NC_012759:4247865:4256357425635742574211065Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex subunit0672
NC_016902:4431235:4439935443993544409991065Escherichia coli KO11FL chromosome, complete genomephosphonate metabolism protein0672
NC_011742:4569683:4580674458067445817381065Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex subunit0670
NC_008563:4656000:4666146466614646672161071Escherichia coli APEC O1, complete genomePhnI, carbon-phosphorus lyase complex subunit0670
NC_007613:4156841:4168796416879641698541059Shigella boydii Sb227, complete genomePhnI0662
NC_016818:546805:5484615484615495431083Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative enzyme of phosphonate metabolism3e-143508
NC_014562:1935088:1935088193508819361641077Pantoea vagans C9-1 chromosome, complete genomeProtein phnI9e-135479
NC_008786:3291700:3310380331038033114861107Verminephrobacter eiseniae EF01-2, complete genomephosphonate metabolism2e-107389
NC_011761:2031876:2031876203187620329731098Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completephosphonate metabolism protein PhnI6e-100364
NC_011206:1917408:1917408191740819185051098Acidithiobacillus ferrooxidans ATCC 53993, complete genomephosphonate metabolism6e-100364
NC_018645:3719302:3741320374132037424711152Desulfobacula toluolica Tol2, complete genomephopsphonate metabolism protein,C-P lyase subunit PhnI8e-99360
NC_011726:1023690:1026135102613510272201086Cyanothece sp. PCC 8801, complete genomephosphonate metabolism3e-71269
NC_013161:1023716:1026161102616110272461086Cyanothece sp. PCC 8802, complete genomephosphonate metabolism3e-71269
NC_008312:7635217:7640499764049976415931095Trichodesmium erythraeum IMS101, complete genomephosphonate metabolism4e-71268
NC_021182:3525523:3537603353760335387151113Clostridium pasteurianum BC1, complete genomeputative enzyme of phosphonate metabolism3e-65249
NC_016641:4653889:4665207466520746663551149Paenibacillus terrae HPL-003 chromosome, complete genomephosphonate metabolism protein1e-64247
NC_015391:504227:5101935101935112991107Carnobacterium sp. 17-4 chromosome, complete genomeputative phosphonate metabolism protein3e-64245
NC_008740:2563278:2562157256215725632811125Marinobacter aquaeolei VT8, complete genomephosphonate metabolism2e-63243