Pre_GI: BLASTP Hits

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Query: NC_007606:3842708:3851860 Shigella dysenteriae Sd197, complete genome

Start: 3851860, End: 3852444, Length: 585

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:4431235:443935144393514439935585Escherichia coli KO11FL chromosome, complete genomephosphonate C-P lyase system protein PhnH1e-107388
NC_011748:4695932:470541747054174706001585Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex subunit1e-107388
NC_013941:5013695:502438450243845024968585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomebacterial phosphonate metabolism protein PhnH2e-107388
NC_013008:5196080:520677952067795207363585Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex subunit2e-107388
NC_011353:5240020:525071852507185251302585Escherichia coli O157:H7 str. EC4115 chromosome, complete genomecarbon-phosphorus lyase complex subunit2e-107388
NC_002695:5164819:517551851755185176102585Escherichia coli O157:H7 str. Sakai, complete genomePhnH2e-107388
NC_002655:5194804:520550352055035206087585Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism2e-107388
NC_011741:4395156:440457544045754405159585Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit2e-107388
NC_009800:4332229:434523343452334345817585Escherichia coli HS, complete genomebacterial phosphonate metabolism protein PhnH2e-107388
CU928160:4395156:440457544045754405159585Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit2e-107388
CU928145:4695932:470541747054174706001585Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-107388
AP010958:5022196:503175250317525032336585Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex subunit PhnH1e-107388
NC_012967:4289929:429948542994854300069585Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-107388
NC_012947:4106031:411403941140394114623585Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completecarbon-phosphorus lyase complex subunit1e-107388
NC_012759:4247865:425742142574214258005585Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex subunit1e-107388
NC_010468:4305105:431271443127144313298585Escherichia coli ATCC 8739, complete genomephosphonate C-P lyase system protein PhnH1e-107388
AC_000091:4313167:432534143253414325925585Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex subunit1e-107388
NC_010473:4409492:441904844190484419632585Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex subunit1e-107388
CP002516:4431235:443935144393514439935585Escherichia coli KO11, complete genomephosphonate C-P lyase system protein PhnH1e-107388
NC_000913:4307471:431868643186864319270585Escherichia coli K12, complete genomecarbon-phosphorus lyase complex subunit1e-107388
NC_013353:5022196:503175250317525032336585Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex subunit PhnH1e-107388
NC_011751:4795928:480676948067694807353585Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex subunit6e-107386
NC_009801:4643000:465254946525494653133585Escherichia coli E24377A, complete genomebacterial phosphonate metabolism protein PhnH5e-107386
CP002185:4566150:457915445791544579738585Escherichia coli W, complete genomecarbon-phosphorus lyase complex subunit4e-107386
NC_011415:4582388:459194545919454592529585Escherichia coli SE11 chromosome, complete genomecarbon-phosphorus lyase complex subunit4e-107386
NC_013364:5040268:505327250532725053856585Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex subunit PhnH1e-106384
NC_011742:4569683:458173845817384582322585Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex subunit2e-106384
NC_008563:4656000:466721046672104667794585Escherichia coli APEC O1, complete genomePhnH, carbon-phosphorus lyase complex subunit2e-106384
NC_004431:4867648:487970348797034880287585Escherichia coli CFT073, complete genomePhnH protein2e-106384
NC_016822:4686971:469639046963904696974585Shigella sonnei 53G, complete genomecarbon-phosphorus lyase complex subunit2e-106384
NC_007384:4530000:453946345394634540047585Shigella sonnei Ss046, complete genomephosphonate metabolism2e-106384
NC_008253:4541915:455326945532694553853585Escherichia coli 536, complete genomePhnH protein9e-106382
NC_010498:4656716:466616046661604666744585Escherichia coli SMS-3-5, complete genomephosphonate metabolism protein PhnH9e-106382
NC_011750:4719477:472899947289994729583585Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex subunit9e-106382
NC_007613:4156841:416985441698544170438585Shigella boydii Sb227, complete genomePhnH5e-105379
NC_014562:1935088:193616419361641936739576Pantoea vagans C9-1 chromosome, complete genomeProtein phnH2e-51201
NC_016818:546805:549543549543550124582Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephosphonate C-P lyase system protein PhnH7e-51199
NC_018645:3719302:374074237407423741320579Desulfobacula toluolica Tol2, complete genomephopsphonate metabolism protein,C-P lyase subunit PhnH6e-22103
NC_011726:1023690:102545410254541026011558Cyanothece sp. PCC 8801, complete genomephosphonate C-P lyase system protein PhnH3e-1374.7
NC_013161:1023716:102548010254801026037558Cyanothece sp. PCC 8802, complete genomephosphonate C-P lyase system protein PhnH3e-1374.7
NC_021182:3525523:353871735387173539310594Clostridium pasteurianum BC1, complete genomephosphonate C-P lyase system protein PhnH9e-1166.6
NC_008312:7635217:763982976398297640407579Trichodesmium erythraeum IMS101, complete genomeputative PhnH protein, phosphonate metabolism, function unknown2e-1065.1
NC_015391:504227:509617509617510192576Carnobacterium sp. 17-4 chromosome, complete genomephosphonate metabolism protein2e-0859.3
NC_008786:3291700:330967033096703310377708Verminephrobacter eiseniae EF01-2, complete genomephosphonate metabolism4e-0858.2