Pre_GI: BLASTP Hits

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Query: NC_007606:3842708:3849847 Shigella dysenteriae Sd197, complete genome

Start: 3849847, End: 3850677, Length: 831

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004431:4867648:488148348814834882325843Escherichia coli CFT073, complete genomemembrane channel protein component of Pn transporter6e-131466
NC_013941:5013695:502616450261645026994831Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate ABC transporter permease7e-131466
NC_013008:5196080:520855952085595209389831Escherichia coli O157:H7 str. TW14359 chromosome, complete genomemembrane channel protein component of Pn transporter7e-131466
NC_002695:5164819:517729851772985178128831Escherichia coli O157:H7 str. Sakai, complete genomemembrane channel protein component of Pn transporter7e-131466
NC_002655:5194804:520728352072835208113831Escherichia coli O157:H7 EDL933, complete genomemembrane channel protein component of Pn transporter7e-131466
NC_011742:4569683:458351845835184584360843Escherichia coli S88 chromosome, complete genomephosphonates transport system, permease protein2e-130465
NC_008563:4656000:466899046689904669832843Escherichia coli APEC O1, complete genomePhnE, subunit of alkylphosphonate ABC transporter2e-130465
AP010958:5022196:503353250335325034362831Escherichia coli O103:H2 str. 12009 DNA, complete genomephosphonate/organophosphate ester transporter subunit PhnE4e-130464
NC_013353:5022196:503353250335325034362831Escherichia coli O103:H2 str. 12009, complete genomephosphonate/organophosphate ester transporter subunit PhnE4e-130464
NC_013364:5040268:505505250550525055882831Escherichia coli O111:H- str. 11128, complete genomephosphonate/organophosphate ester transporter subunit PhnE4e-130464
CU928145:4695932:470719747071974708039843Escherichia coli 55989 chromosome, complete genomephosphonates transport system, permease protein3e-130464
NC_011748:4695932:470719747071974708039843Escherichia coli 55989, complete genomephosphonates transport system, permease protein3e-130464
NC_012967:4289929:430126543012654302083819Escherichia coli B str. REL606 chromosome, complete genomephosphonate/organophosphate ester transporter1e-127456
NC_011750:4719477:473077947307794731558780Escherichia coli IAI39 chromosome, complete genomephosphonates transport system permease1e-119429
NC_011751:4795928:480854948085494809328780Escherichia coli UMN026 chromosome, complete genomephosphonates transport system, permease protein1e-119429
NC_010498:4656716:466794046679404668719780Escherichia coli SMS-3-5, complete genomephosphonate ABC transporter, permease protein1e-119429
NC_008253:4541915:455504945550494555828780Escherichia coli 536, complete genomephosphonates transport system permease protein PhnE1e-119429
NC_016822:4686971:469817046981704698949780Shigella sonnei 53G, complete genomemembrane channel protein component of Pn transporter1e-119429
NC_011353:5240020:525249852524985253277780Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate ABC transporter permease1e-119429
NC_007613:4156841:417163441716344172413780Shigella boydii Sb227, complete genomemembrane channel protein component of Pn transporter5e-119427
NC_010468:4305105:431073943107394311518780Escherichia coli ATCC 8739, complete genomephosphonate ABC transporter, inner membrane subunit5e-119427
CU928160:4395156:440635544063554407134780Escherichia coli IAI1 chromosome, complete genomephosphonates transport system, permease protein5e-119427
CP002185:4566150:458093445809344581713780Escherichia coli W, complete genomephosphonate ABC transporter, inner membrane subunit5e-119427
NC_009801:4643000:465432946543294655108780Escherichia coli E24377A, complete genomephosphonate ABC transporter, permease protein5e-119427
NC_011741:4395156:440635544063554407134780Escherichia coli IAI1 chromosome, complete genomephosphonates transport system, permease5e-119427
NC_012947:4106031:411206441120644112843780Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate ABC transporter permease5e-119427
NC_007384:4530000:454124345412434542022780Shigella sonnei Ss046, complete genomemembrane channel protein component of Pn transporter4e-119427
NC_011415:4582388:459372545937254594504780Escherichia coli SE11 chromosome, complete genomephosphonate ABC transporter permease2e-118425
NC_009800:4332229:434701343470134347792780Escherichia coli HS, complete genomephosphonate ABC transporter, permease protein2e-118425
NC_014118:1331164:134576213457621346601840Burkholderia sp. CCGE1002 chromosome chromosome 2, completephosphonate ABC transporter, inner membrane subunit2e-73275
CP002516:4431235:443730544373054438155851Escherichia coli KO11, complete genome6e-69260
NC_000913:4307471:432068443206844321304621Escherichia coli K12, complete genomephosphonate/organophosphate ester transporter subunit3e-68258
NC_000913:4307471:432046643204664320834369Escherichia coli K12, complete genomephosphonate/organophosphate ester transporter (pseudogene)5e-56218
NC_015563:4773415:479526947952694796114846Delftia sp. Cs1-4 chromosome, complete genomephosphonate ABC transporter inner membrane subunit2e-37155
NC_015422:2078618:208862220886222089419798Alicycliphilus denitrificans K601 chromosome, complete genomephosphonate ABC transporter inner membrane subunit9e-35147
NC_009138:3153576:317380131738013174598798Herminiimonas arsenicoxydans, complete genomePhosphite transport system permease protein ptxC6e-35147
NC_009659:3384997:340890234089023409699798Janthinobacterium sp. Marseille chromosome, complete genomephosphonate ABC-type transport system permease6e-35147
NC_012811:1138897:114272811427281143561834Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative phosphate permease component of ATP-dependent phosphate uptake system1e-34146
NC_008312:7635217:763858476385847639378795Trichodesmium erythraeum IMS101, complete genomephosphonate ABC transporter, inner membrane subunit2e-33142
NC_008740:1414926:143712914371291437959831Marinobacter aquaeolei VT8, complete genomephosphonate ABC transporter, inner membrane subunit7e-33140
NC_009649:16907:366623666237501840Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,phosphate ABC transporter permease4e-31135
NC_004193:375416:627205627205628011807Oceanobacillus iheyensis HTE831, complete genomealkylphosphonate ABC tranporter permease6e-30131
NC_009720:4367584:438739143873914388197807Xanthobacter autotrophicus Py2, complete genomephosphonate ABC transporter, inner membrane subunit3e-29129
NC_007925:4294472:429529542952954296137843Rhodopseudomonas palustris BisB18, complete genomePhosphonate uptake transporter3e-29128
NC_011983:760113:7620767620767634221347Agrobacterium radiobacter K84 chromosome 2, complete genomephosphonate ABC transporter, permease protein3e-28125
NC_014727:186000:187834187834188634801Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,ABC phosphate/phosphonate transporter permease1e-27123
NC_008312:7635217:763780776378077638544738Trichodesmium erythraeum IMS101, complete genomephosphonate ABC transporter, inner membrane subunit4e-27122
NC_015224:1641819:165741316574131658285873Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative ABC transport membrane permease7e-27120
NC_008800:3123495:312841331284133129216804Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative ABC transport membrane permease1e-26120
NC_011983:760113:761087761087762067981Agrobacterium radiobacter K84 chromosome 2, complete genomephosphonate ABC transporter, permease protein1e-26120
NC_014727:186000:188634188634189446813Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,ABC phosphate/phosphonate transporter permease5e-26118
NC_012731:1088321:111033811103381111252915Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative inner membrane permease of ABC transporter1e-25117
NC_009648:293052:325875325875326747873Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein9e-26117
NC_006395:217139:242112242112242990879Haloarcula marismortui ATCC 43049 plasmid pNG700, completephosphonates ABC transporter permease protein7e-26117
NC_008740:3602367:360236736023673603185819Marinobacter aquaeolei VT8, complete genomephosphonate ABC transporter, inner membrane subunit4e-25115
NC_015224:1641819:165827516582751659180906Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative ABC transport membrane permease5e-25114
NC_008800:3123495:312750831275083128413906Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative ABC transport membrane permease6e-25114
NC_007492:2771021:278501227850122785779768Pseudomonas fluorescens PfO-1, complete genomePhosphonate uptake transporter7e-24111
NC_010002:2933909:294407629440762944876801Delftia acidovorans SPH-1, complete genomephosphonate ABC transporter, inner membrane subunit6e-24111
NC_007973:3240866:325093432509343251734801Ralstonia metallidurans CH34 chromosome 1, complete sequencePhosphonate uptake transporter6e-24111
NC_009720:4367584:438819743881974389015819Xanthobacter autotrophicus Py2, complete genomephosphonate ABC transporter, inner membrane subunit7e-24110
NC_009648:293052:324994324994325878885Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomemembrane channel protein component of Pn transporter7e-24110
NC_007760:535825:5393135393135410431731Anaeromyxobacter dehalogenans 2CP-C, complete genomeABC phosphonate transporter, fused inner membrane subunits1e-23110
NC_008358:2574343:2582416258241625834381023Hyphomonas neptunium ATCC 15444, complete genomephosphonate ABC transporter, permease protein6e-23108
NC_012731:1088321:110945711094571110341885Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative inner membrane permease of ABC transporter7e-23107
NC_007925:4294472:429447242944724295293822Rhodopseudomonas palustris BisB18, complete genomePhosphonate uptake transporter3e-22105
NC_004193:375416:628011628011628826816Oceanobacillus iheyensis HTE831, complete genomealkylphosphonate ABC tranporter permease4e-22105
NC_008740:3602367:360318236031823603997816Marinobacter aquaeolei VT8, complete genomephosphonate ABC transporter, inner membrane subunit3e-21102
NC_018664:1:1799817998195781581Clostridium acidurici 9a chromosome, complete genomeABC phosphonate transporter permease protein4e-21102
NC_009439:3535152:353864435386443539405762Pseudomonas mendocina ymp, complete genomephosphonate ABC transporter, inner membrane subunit2e-2099.8
NC_007633:952728:9548629548629575972736Mycoplasma capricolum subsp. capricolum ATCC 27343, completealkylphosphonate ABC transporter, permease protein2e-2099.4
NC_021150:1965264:196450919645091965267759Azotobacter vinelandii CA6, complete genomephosphonate ABC transporter, permease component1e-1997.1
NC_012560:1965251:196449619644961965254759Azotobacter vinelandii DJ, complete genomephosphonate ABC transporter, permease component1e-1997.1
NC_014751:946155:9483229483229510572736Mycoplasma leachii PG50 chromosome, complete genomephosphonate ABC transporter, permease protein PhnE2e-1996.7
NC_021150:1965264:196526419652641966094831Azotobacter vinelandii CA6, complete genomephosphonate ABC transporter, permease component2e-1996.7
NC_012560:1965251:196525119652511966081831Azotobacter vinelandii DJ, complete genomephosphonate ABC transporter, permease component2e-1996.7
NC_010501:4787963:480482048048204805647828Pseudomonas putida W619, complete genomebinding-protein-dependent transport systems inner membrane component3e-1995.9
NC_009439:3535152:353782035378203538647828Pseudomonas mendocina ymp, complete genomephosphonate ABC transporter, inner membrane subunit5e-1995.1
NC_015278:1960774:196077419607741961577804Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomephosphonate ABC transporter, permease protein PhnE3e-1892.4
NC_010501:4787963:480405648040564804823768Pseudomonas putida W619, complete genomephosphonate ABC transporter, inner membrane subunit1e-1790.5
NC_007492:2771021:278577627857762786603828Pseudomonas fluorescens PfO-1, complete genomePhosphonate uptake transporter3e-1685.9
NC_021182:3525523:352840835284083529274867Clostridium pasteurianum BC1, complete genomeABC-type phosphate/phosphonate transport system, permease component2e-1582.8
NC_019902:831911:8544888544888564851998Thioalkalivibrio nitratireducens DSM 14787, complete genomePhosphonate ABC transporter permease protein phnE22e-1480.1
NC_015391:504227:519174519174520046873Carnobacterium sp. 17-4 chromosome, complete genometransporter3e-1375.9
NC_013192:232778:256941256941257747807Leptotrichia buccalis DSM 1135, complete genomebinding-protein-dependent transport systems inner membrane component3e-1375.5
NC_015873:63487:7632176321778681548Megasphaera elsdenii DSM 20460, complete genomephosphonate transport system permease protein3e-1272.4
NC_015391:504227:518386518386519177792Carnobacterium sp. 17-4 chromosome, complete genometransporter3e-1169.3
NC_005071:835005:8567388567388583031566Prochlorococcus marinus str. MIT 9313, complete genomeputative phosphonate ABC transporter9e-1064.3
NC_021182:3525523:352927435292743530059786Clostridium pasteurianum BC1, complete genomeABC-type phosphate/phosphonate transport system, permease component2e-0963.5
NC_007513:1126914:1150875115087511524041530Synechococcus sp. CC9902, complete genomeputative phosphonate ABC transporter2e-0756.2
NC_010334:3040589:3057701305770130592541554Shewanella halifaxensis HAW-EB4, complete genomebinding-protein-dependent transport systems inner membrane component7e-0754.7
NC_013192:232778:257782257782258576795Leptotrichia buccalis DSM 1135, complete genomebinding-protein-dependent transport systems inner membrane component1e-0654.3