Pre_GI: BLASTP Hits

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Query: NC_007606:3755155:3766941 Shigella dysenteriae Sd197, complete genome

Start: 3766941, End: 3767534, Length: 594

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:3988351:401309240130924013775684Escherichia coli SMS-3-5, complete genomeputative lipoprotein1e-101368
CP002516:119935:124829124829125512684Escherichia coli KO11, complete genomeputative inner membrane lipoprotein1e-76285
CU928145:4131924:414946141494614150144684Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; putative exported protein1e-76285
CP002185:3964500:398056139805613981244684Escherichia coli W, complete genomeputative inner membrane lipoprotein1e-76285
NC_011748:4131924:414946141494614150144684Escherichia coli 55989, complete genomeconserved hypothetical protein; putative exported protein1e-76285
NC_009801:4073968:409059740905974091280684Escherichia coli E24377A, complete genomeputative lipoprotein1e-76285
NC_011415:4006500:402263040226304023313684Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-76285
NC_016902:119935:124829124829125512684Escherichia coli KO11FL chromosome, complete genomeputative inner membrane lipoprotein1e-76285
NC_012967:3696877:371226437122643712947684Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein5e-76283
NC_012947:126596:131490131490132173684Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeinner membrane lipoprotein5e-76283
NC_010468:111504:116572116572117255684Escherichia coli ATCC 8739, complete genomeputative inner membrane lipoprotein2e-75281
NC_009800:3787320:380410138041013804784684Escherichia coli HS, complete genomeputative lipoprotein3e-75280
NC_004337:3590323:374437537443753744923549Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-74277