Pre_GI: BLASTP Hits

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Query: NC_007606:1999870:1999870 Shigella dysenteriae Sd197, complete genome

Start: 1999870, End: 2001723, Length: 1854

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:2156091:2184001218400121858541854Escherichia coli HS, complete genomeAsmA protein01188
NC_020181:360500:3628383628383646851848Enterobacter aerogenes EA1509E, complete genomeAsmA protein0769
NC_015663:4950000:5009496500949650113431848Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative assembly protein0767
NC_021066:460292:4602924602924621391848Raoultella ornithinolytica B6, complete genomeassembly protein0766
NC_011283:1690193:1690193169019316920401848Klebsiella pneumoniae 342 chromosome, complete genomeassembly protein0758
NC_013850:1658010:1658010165801016598571848Klebsiella variicola At-22 chromosome, complete genomeAsmA family protein0758
NC_020211:1704500:1705129170512917069611833Serratia marcescens WW4, complete genomeputative assembly protein2e-159562
NC_012917:1506083:1506083150608315079181836Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeAsmA family protein2e-157556
NC_013421:3279499:3311939331193933137741836Pectobacterium wasabiae WPP163, complete genomeAsmA family protein1e-155550
NC_015566:1659288:1662716166271616645481833Serratia sp. AS12 chromosome, complete genomeAsmA family protein7e-155547
NC_015567:1660462:1662728166272816645601833Serratia sp. AS9 chromosome, complete genomeAsmA family protein7e-155547
NC_004547:1600900:1600900160090016027351836Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative outer membrane assembly protein9e-154544
NC_009832:1719149:1719775171977517216101836Serratia proteamaculans 568, complete genomeAsmA family protein5e-151535
NC_007712:1601499:1605112160511216069171806Sodalis glossinidius str. 'morsitans', complete genomeouter membrane assembly protein6e-151534
NC_020064:1547524:1547524154752415493651842Serratia marcescens FGI94, complete genomeuncharacterized protein involved in outer membrane biogenesis1e-147523
NC_015224:1763848:1763848176384817656951848Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative assembly protein2e-147523
NC_017047:1862893:1865456186545618673061851Rahnella aquatilis HX2 chromosome, complete genomeputative assembly protein2e-141503
NC_014500:1491660:1494411149441114962251815Dickeya dadantii 3937 chromosome, complete genomeputative assembly protein3e-141502
NC_015061:1902251:1904814190481419066641851Rahnella sp. Y9602 chromosome, complete genomeAsmA family protein1e-140500
NC_016818:1927500:1928904192890419307541851Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein6e-140498
NC_012779:1286500:1289083128908312908701788Edwardsiella ictaluri 93-146, complete genomeprotein AsmA6e-120431
NC_013508:1289159:1292923129292312947071785Edwardsiella tarda EIB202, complete genomeAsmA family protein8e-119427
NC_009901:2915939:2937695293769529395331839Shewanella pealeana ATCC 700345, complete genomeAsmA family protein2e-29130
NC_011901:3072817:3090105309010530922432139Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeAsmA family protein5e-1893.2
NC_013889:2603914:2605120260512026073482229Thioalkalivibrio sp. K90mix chromosome, complete genomeAsmA family protein6e-1892.8
NC_008789:1237969:1238775123877512409732199Halorhodospira halophila SL1, complete genomeAsmA family protein3e-1377
NC_009439:4661102:4661102466110246633272226Pseudomonas mendocina ymp, complete genomeAsmA family protein4e-1067
NC_019940:2236630:2255832225583222581112280Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein5e-1066.6
NC_018868:2935580:2935580293558029376852106Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeAsmA family superfamily protein6e-1066.6
NC_003078:578000:6027866027866044531668Sinorhizobium meliloti 1021 plasmid pSymB, complete sequenceputative protein, similar to protein involved in assembly of outer membrane proteins1e-0965.5
NC_017323:689512:7106127106127136353024Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequenceAsmA family protein2e-0758.2
NC_020829:5174354:5176574517657451788022229Pseudomonas denitrificans ATCC 13867, complete genomeAsmA family protein3e-0757.4
NC_009620:1504933:1527046152704615300873042Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceAsmA family protein2e-0655.1
NC_016629:3496630:3522986352298635257782793Desulfovibrio africanus str. Walvis Bay chromosome, completeAsmA family protein4e-0653.9