Pre_GI: BLASTP Hits

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Query: NC_007606:1515403:1525712 Shigella dysenteriae Sd197, complete genome

Start: 1525712, End: 1526020, Length: 309

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1818897:1824859182485918259591101Shigella sonnei 53G, complete genomeouter membrane porin protein1e-53207
NC_007384:1737885:1745537174553717466371101Shigella sonnei Ss046, complete genomeputative outer membrane porin protein1e-53207
NC_010498:1700447:1705762170576217068621101Escherichia coli SMS-3-5, complete genomeporin family protein1e-53207
NC_011750:1809943:1822110182211018232101101Escherichia coli IAI39 chromosome, complete genomeouter membrane porin protein ompD5e-53206
NC_017328:1835108:1844591184459118456911101Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane porin protein5e-53205
NC_004741:1823000:1828994182899418300941101Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane porin protein5e-53205
NC_008258:1784637:1791372179137217924721101Shigella flexneri 5 str. 8401, complete genomeputative outer membrane porin protein7e-53205
NC_004337:1783645:1792048179204817931481101Shigella flexneri 2a str. 301, complete genomeputative outer membrane porin protein2e-52204
NC_002695:2056545:2066351206635120674511101Escherichia coli O157:H7 str. Sakai, complete genomeputaive outer membrane porin protein1e-52204
NC_002655:2015000:2021022202102220221221101Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane porin protein1e-52204
NC_011353:1971145:1980951198095119820511101Escherichia coli O157:H7 str. EC4115 chromosome, complete genomegram-negative porin family protein1e-52204
NC_013008:1971662:1979927197992719810271101Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane porin protein1e-52204
NC_013941:1857724:1870815187081518719151101Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeGram-negative porin family6e-52202
NC_013941:699286:7138747138747149561083Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeouter membrane porin protein C1e-41167
NC_011740:1991941:1996644199664419977471104Escherichia fergusonii ATCC 35469, complete genomeouter membrane porin; DLP12 prophage3e-41166
NC_011748:824367:8366178366178376991083Escherichia coli 55989, complete genomeouter membrane porin; DLP12 prophage1e-40164
CU928145:824367:8366178366178376991083Escherichia coli 55989 chromosome, complete genomeouter membrane porin; DLP12 prophage1e-40164
NC_011415:2153243:2153243215324321543251083Escherichia coli SE11 chromosome, complete genomeputative outer membrane porin protein3e-40163
NC_011742:1177946:1197451119745111985931143Escherichia coli S88 chromosome, complete genomeouter membrane porin1e-38158
NC_007946:1239278:1256542125654212576841143Escherichia coli UTI89, complete genomeouter membrane porin protein NmpC precursor1e-38158
NC_008563:1175035:1193929119392911950711143Escherichia coli APEC O1, complete genomeouter membrane porin protein NmpC precursor1e-38158
NC_004431:1401681:1420007142000714211491143Escherichia coli CFT073, complete genomeOuter membrane porin protein nmpC precursor1e-38158
NC_011751:643976:6614176614176624991083Escherichia coli UMN026 chromosome, complete genomeputative outer membrane porin1e-38157
NC_011294:2334979:2359510235951023606461137Salmonella enterica subsp. enterica serovar Enteritidis strouter membrane porin protein C3e-35146
NC_011274:2325840:235037923503792351347969Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91outer membrane protein C4e-35146
NC_015566:3659318:3676851367685136779691119Serratia sp. AS12 chromosome, complete genomeporin5e-35145
NC_010473:498252:5130845130845153802297Escherichia coli str. K-12 substr. DH10B, complete genome5e-34142
AC_000091:558920:5749815749815761081128Escherichia coli W3110 DNA, complete genome4e-33139
NC_000913:558920:5749815749815761081128Escherichia coli K12, complete genomeDLP12 prophage; truncated outer membrane porin (pseudogene)4e-33139
NC_010473:623810:6276016276016286401040Escherichia coli str. K-12 substr. DH10B, complete genome9e-33138
NC_014121:1848971:1862509186250918636181110Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane pore protein N, non-specific3e-32137
NC_000913:2028472:203286320328632033267405Escherichia coli K12, complete genome8e-32135
NC_011149:1110642:1126504112650411277151212Salmonella enterica subsp. enterica serovar Agona str. SL483,outer membrane protein N1e-31134
NC_011205:1227373:124031812403181240716399Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853outer membrane protein N2e-31134
NC_013716:2139952:2145537214553721467121176Citrobacter rodentium ICC168, complete genomeOuter membrane porin protein2e-31134
NC_013961:2370994:2399119239911924002251107Erwinia amylovora, complete genomeOuter membrane protein 1B precursor3e-31133
NC_013971:2408522:2436647243664724377531107Erwinia amylovora ATCC 49946 chromosome, complete genomeouter membrane protein C3e-31133
NC_013716:1756545:1760425176042517615581134Citrobacter rodentium ICC168, complete genomeouter membrane protein N (porin)9e-31132
NC_011274:1129686:1153689115368911548851197Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91outer membrane protein S19e-31132
NC_004631:948054:9841259841259853091185Salmonella enterica subsp. enterica serovar Typhi Ty2, completeouter membrane protein S18e-31132
NC_016832:948029:9818009818009829841185Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane porin protein ompD8e-31132
CU928160:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN7e-31132
NC_011741:2091249:2095731209573120969481218Escherichia coli IAI1 chromosome, complete genomePorin OmpN7e-31132
NC_013941:2425233:2428383242838324295701188Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-31132
NC_002695:2655445:265920726592072659782576Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-31132
NC_011353:2563056:256681825668182567393576Escherichia coli O157:H7 str. EC4115 chromosome, complete genome5e-31132
NC_013008:2561586:256579925657992566374576Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane protein5e-31132
NC_016514:2476359:2480816248081624819251110Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane protein N5e-31132
NC_016810:2027311:2035137203513720363331197Salmonella enterica subsp. enterica serovar Typhimurium strouter membrane protein S11e-30131
NC_016856:2085283:2088974208897420901701197Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative porin1e-30131
NC_016857:2027311:2035137203513720363331197Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative porin1e-30131
NC_016863:2029340:2037166203716620383621197Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative porin1e-30131
NC_017046:2026672:2034498203449820356941197Salmonella enterica subsp. enterica serovar Typhimurium str. 798outer membrane protein S11e-30131
NC_015663:4906652:4912147491214749132891143Enterobacter aerogenes KCTC 2190 chromosome, complete genomeouter membrane pore protein S12e-30130
NC_011283:1901229:1915691191569119168361146Klebsiella pneumoniae 342 chromosome, complete genomeporin2e-30130
NC_002655:2730659:273442127344212734996576Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane protein3e-30130
NC_014121:1101093:1103964110396411050161053Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeouter membrane phosphoporin protein E7e-30129
NC_016514:891772:8958698958698969211053Enterobacter cloacae EcWSU1 chromosome, complete genomeouter membrane pore protein E6e-30129
NC_015761:1970042:1977884197788419790741191Salmonella bongori NCTC 12419, complete genomeouter membrane protein S15e-30129
NC_013282:923500:9260759260759271601086Cronobacter turicensis, complete genomeOuter membrane pore protein E5e-30129
NC_016612:4119410:4119410411941041205161107Klebsiella oxytoca KCTC 1686 chromosome, complete genomeouter membrane pore protein N, non-specific5e-30129
NC_016831:1865681:1870280187028018714761197Salmonella enterica subsp. enterica serovar Gallinarum/pullorumouter membrane protein S14e-30129
NC_012947:2366000:2369930236993023710631134Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeporin Gram-negative type1e-29128
NC_008563:1505405:1522248152224815233811134Escherichia coli APEC O1, complete genomeouter membrane pore protein N, non-specific1e-29128
NC_013361:1896446:1918777191877719199101134Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane pore protein N1e-29128
NC_016822:2201388:221146522114652211830366Shigella sonnei 53G, complete genomeputative outer membrane pore protein2e-29127
NC_015061:2770856:2785809278580927869211113Rahnella sp. Y9602 chromosome, complete genomeporin Gram-negative type2e-29127
NC_010498:1210145:1224155122415512253181164Escherichia coli SMS-3-5, complete genomeporin family protein1e-29127
NC_011415:2248417:2252020225202022531831164Escherichia coli SE11 chromosome, complete genomeputative porin1e-29127
NC_013364:2522888:2526040252604025272031164Escherichia coli O111:H- str. 11128, complete genomeputative outer membrane pore protein1e-29127
NC_017060:59500:648716487165473603Rahnella aquatilis HX2 plasmid PRA1, complete sequenceouter membrane pore protein N, non-specific8e-29125
NC_015062:58826:647326473265292561Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence8e-29125
NC_007946:289425:2912382912382922991062Escherichia coli UTI89, complete genomeouter membrane pore protein E precursor4e-28123
NC_008563:287136:2912172912172922781062Escherichia coli APEC O1, complete genomeouter membrane pore protein E precursor4e-28123
NC_011742:291237:2912372912372922921056Escherichia coli S88 chromosome, complete genomeouter membrane phosphoporin protein E4e-28123
NC_013716:357928:3596823596823607341053Citrobacter rodentium ICC168, complete genomeouter membrane pore protein E4e-28123
NC_004431:364000:3663973663973674581062Escherichia coli CFT073, complete genomeOuter membrane pore protein E precursor4e-28123
NC_011745:291422:2931642931642942191056Escherichia coli ED1a chromosome, complete genomeouter membrane phosphoporin protein E4e-28123
NC_010498:301000:3028133028133038681056Escherichia coli SMS-3-5, complete genomeouter membrane pore protein E3e-28123
NC_013361:313540:3175503175503186051056Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane phosphoporin protein E3e-28123
NC_007384:307013:3110233110233120781056Shigella sonnei Ss046, complete genomeouter membrane pore protein E (E,Ic,NmpAB)3e-28123
NC_017328:303987:3057293057293067841056Shigella flexneri 2002017 chromosome, complete genomeOuter membrane pore protein E1e-27121
NC_020063:2449554:2453423245342324545921170Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)1e-27121
NC_020064:1409596:1409596140959614106931098Serratia marcescens FGI94, complete genomeouter membrane protein (porin)3e-27120
NC_016860:364981:3649813649813660331053Salmonella enterica subsp. enterica serovar Typhimurium strouter membrane porin E2e-26117
NC_016856:365665:3656653656653667171053Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Souter membrane phosphoporin protein E2e-26117
NC_006905:368942:3689423689423699941053Salmonella enterica subsp. enterica serovar Choleraesuis strouter membrane pore protein e (e,ic,nmpab)2e-26117
NC_016832:2581145:2602679260267926037311053Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane pore protein E1e-25115
NC_009648:293052:3200013200013210291029Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeouter membrane phosphoporin protein E9e-26115
NC_021066:3028421:3030950303095030320021053Raoultella ornithinolytica B6, complete genomeouter membrane phosphoporin protein E8e-26115
NC_014618:3700640:3715169371516937162661098Enterobacter cloacae SCF1 chromosome, complete genomeporin8e-26115
NC_012731:1088321:1105013110501311060651053Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeouter membrane phosphoporin protein E8e-26115
NC_011283:4438500:4441282444128244423341053Klebsiella pneumoniae 342 chromosome, complete genomeouter membrane phosphoporin protein E8e-26115
NC_020063:3690308:3744533374453337455971065Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein (porin)1e-25114
NC_014121:2745097:2764515276451527655701056Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeOmpF porin2e-25114
NC_008253:1938975:1938975193897519400331059Escherichia coli 536, complete genomeputative outer membrane pore protein3e-24110
NC_004431:2185750:2185750218575021868771128Escherichia coli CFT073, complete genomeOuter membrane protein N precursor3e-24110
NC_020260:3004500:3019080301908030201501071Cronobacter sakazakii Sp291, complete genomeouter membrane phosphoporin protein E7e-24108
NC_020064:2779864:2792369279236927934481080Serratia marcescens FGI94, complete genomeouter membrane protein (porin)3e-23106
NC_011740:1991941:1995018199501819960731056Escherichia fergusonii ATCC 35469, complete genomeOuter membrane protein N precursor (porin)1e-22105
NC_013353:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009, complete genomeouter membrane porin protein2e-22104
NC_009801:2159123:2163636216363621647091074Escherichia coli E24377A, complete genomeouter membrane protein homolog2e-22104
AP010958:2272919:2273321227332122743941074Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted outer membrane porin protein2e-22104
NC_007613:1038000:105747910574791057976498Shigella boydii Sb227, complete genomeputative outer membrane porin protein C precurser3e-22103
NC_021066:601029:6145096145096155791071Raoultella ornithinolytica B6, complete genomeouter membrane protein F9e-22102
NC_016612:5208936:5214784521478452158541071Klebsiella oxytoca KCTC 1686 chromosome, complete genomeporin4e-2096.7
NC_016902:1902431:1919201191920119203161116Escherichia coli KO11FL chromosome, complete genomeporin2e-1994.7
CP002185:2181936:2185539218553921866541116Escherichia coli W, complete genome2e-1994.7
CP002516:1902431:1919201191920119203161116Escherichia coli KO11, complete genomeporin Gram-negative type2e-1994.7
NC_008563:2041345:2041345204134520424901146Escherichia coli APEC O1, complete genomeOuter membrane protein N precursor2e-1994.4
NC_015663:3466471:3477376347737634784821107Enterobacter aerogenes KCTC 2190 chromosome, complete genomeporin3e-1787
NC_014500:2934232:2942238294223829433411104Dickeya dadantii 3937 chromosome, complete genomeouter membrane porin 1a (Ia;b;F)1e-1684.7
NC_014500:2934232:2943874294387429449801107Dickeya dadantii 3937 chromosome, complete genomeouter membrane protein F2e-1581.3
NC_009800:2049346:205414120541412054344204Escherichia coli HS, complete genomeouter membrane protein, truncation3e-1373.9
NC_014500:2934232:2945973294597329470611089Dickeya dadantii 3937 chromosome, complete genomeouter membrane protein F4e-1167
NC_017328:2090679:209197120919712092180210Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane protein1e-1065.1
NC_008258:2045000:204503720450372045246210Shigella flexneri 5 str. 8401, complete genomeputative outer membrane protein1e-1065.1
NC_004741:2009769:201304720130472013256210Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane protein1e-1065.1
NC_017328:2090679:208986720898672090754888Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-0650.4
NC_004741:2009769:201094320109432011830888Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane pore protein3e-0650.4
NC_004337:3590323:360597936059793606866888Shigella flexneri 2a str. 301, complete genomeputative outer membrane pore protein3e-0650.4