Pre_GI: BLASTP Hits

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Query: NC_007606:1515403:1516855 Shigella dysenteriae Sd197, complete genome

Start: 1516855, End: 1517748, Length: 894

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:1857724:185866518586651859558894Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-161568
NC_002655:2015000:203337920333792034272894Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-161568
NC_012759:1409086:142504814250481425941894Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-160565
NC_010473:1607646:162358416235841624477894Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-160565
AC_000091:1521976:153667915366791537572894Escherichia coli W3110 DNA, complete genomehypothetical protein1e-160565
NC_000913:1517051:153298915329891533882894Escherichia coli K12, complete genomehypothetical protein1e-160565
NC_010498:1700447:171813617181361719029894Escherichia coli SMS-3-5, complete genomePhzF family phenazine biosynthesis protein9e-159559
NC_010468:2406387:240783824078382408731894Escherichia coli ATCC 8739, complete genomephenazine biosynthesis protein PhzF family2e-158558
NC_007384:1737885:175974617597461760639894Shigella sonnei Ss046, complete genomehypothetical protein4e-158557
NC_016822:1818897:183773218377321838625894Shigella sonnei 53G, complete genomehypothetical protein4e-158557
NC_011750:1809943:180994318099431810836894Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-158557
NC_011745:1581907:159687915968791597772894Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-157555
NC_011751:1714131:173057917305791731472894Escherichia coli UMN026 chromosome, complete genomehypothetical protein3e-157554
NC_004431:1713141:172973217297321730625894Escherichia coli CFT073, complete genomeHypothetical protein yddE3e-157554
NC_011742:1528668:154568915456891546582894Escherichia coli S88 chromosome, complete genomehypothetical protein2e-156551
NC_008563:1577879:159259615925961593489894Escherichia coli APEC O1, complete genomeconserved hypothetical protein YddE2e-156551
NC_007946:1586656:160367816036781604571894Escherichia coli UTI89, complete genomehypothetical protein YddE2e-156551
NC_011740:1494796:150929615092961510189894Escherichia fergusonii ATCC 35469, complete genomehypothetical protein1e-155549
NC_021182:2059143:206022920602292061137909Clostridium pasteurianum BC1, complete genomephenazine biosynthesis protein PhzF family1e-68260
NC_009848:3631243:363366736336673634563897Bacillus pumilus SAFR-032, complete genomephenazine biosynthesis protein1e-35150
NC_016935:2567039:259268325926832593528846Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein9e-33140
NC_015690:2039215:204396620439662044874909Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein1e-32140
NC_017095:269165:275882275882276760879Fervidobacterium pennivorans DSM 9078 chromosome, complete genomephenazine biosynthesis protein PhzF family protein2e-27122
NC_014221:1518583:153273615327361533635900Truepera radiovictrix DSM 17093 chromosome, complete genomephenazine biosynthesis protein PhzF family2e-26120
NC_008686:1383891:141630214163021417177876Paracoccus denitrificans PD1222 chromosome 1, complete sequencephenazine biosynthesis protein PhzF family5e-26118
NC_003454:2080705:209594220959422096823882Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completePhenazine biosynthesis protein phzF1e-25117
NC_006526:1976779:200075920007592001646888Zymomonas mobilis subsp. mobilis ZM4, complete genomepredicted epimerase1e-25117
NC_015275:3761889:377841137784113779289879Clostridium lentocellum DSM 5427 chromosome, complete genomephenazine biosynthesis protein PhzF family4e-23108
NC_009718:518873:519799519799520677879Fervidobacterium nodosum Rt17-B1, complete genomePhzF family phenazine biosynthesis protein1e-22107
NC_019673:895418:897363897363898205843Saccharothrix espanaensis DSM 44229 complete genomePhenazine biosynthesis protein, PhzF family2e-21103
NC_010087:319063:329790329790330668879Burkholderia multivorans ATCC 17616 chromosome 3, completephenazine biosynthesis protein PhzF family2e-1996.3
NC_010801:550270:594190594190595068879Burkholderia multivorans ATCC 17616 chromosome 3, completepredicted epimerase2e-1996.3
NC_007802:1093785:109904310990431099909867Jannaschia sp. CCS1, complete genomePhenazine biosynthesis PhzC/PhzF protein4e-1892
NC_009953:3552738:355273835527383553583846Salinispora arenicola CNS-205 chromosome, complete genomePhzF family phenazine biosynthesis protein9e-1890.9
NC_010512:110932:116198116198117070873Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencephenazine biosynthesis protein PhzF family3e-1789.4
NC_016111:1484424:148575814857581486633876Streptomyces cattleya NRRL 8057, complete genomeoxidoreductase7e-1787.8
NC_015564:1199330:119933011993301200115786Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomePhenazine biosynthesis protein PhzF family3e-1685.9
NC_005085:2869159:287733528773352878168834Chromobacterium violaceum ATCC 12472, complete genomeprobable phenazine biosynthesis protein3e-1685.9
NC_014391:3103000:312599931259993126856858Micromonospora aurantiaca ATCC 27029 chromosome, complete genomephenazine biosynthesis protein PhzF family4e-1685.5
NC_013665:2132000:214887721488772149755879Methanocella paludicola SANAE, complete genomeputative phenazine biosynthesis protein8e-1684.7
NC_008463:4133700:415479341547934155629837Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative phenazine biosynthesis protein1e-1584.3
NC_013929:4927380:494100849410084941964957Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1583.6
NC_002516:1474000:148021514802151481051837Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-1583.6
NC_018679:2541986:255869325586932559484792Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completephenazine biosynthesis protein, PhzF family5e-1582
NC_016027:2580477:259893525989352599777843Gluconacetobacter xylinus NBRC 3288, complete genomephenazine biosynthesis PhzC/PhzF protein4e-1582
NC_014965:1428902:152169115216911522575885Vibrio vulnificus MO6-24/O chromosome I, complete sequencephenazine biosynthesis protein PhzF like protein8e-1581.3
NC_013947:4602959:461273346127334613575843Stackebrandtia nassauensis DSM 44728 chromosome, complete genomephenazine biosynthesis protein PhzF family2e-1479.7
NC_008570:3777469:379700037970003797803804Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomephenazine biosynthesis protein PhzF family6e-1478.2
NC_010505:1205747:120810412081041208988885Methylobacterium radiotolerans JCM 2831, complete genomephenazine biosynthesis protein PhzF family7e-1478.2
NC_014632:1248611:127325512732551274103849Ilyobacter polytropus DSM 2926 chromosome, complete genomephenazine biosynthesis protein PhzF family1e-1377.8
NC_014817:332000:352598352598353434837Asticcacaulis excentricus CB 48 chromosome 2, complete sequencephenazine biosynthesis protein phzf family1e-1377.4
UCMB5137:1:257102571026486777Bacillus atrophaeus UCMB-5137PhzF family phenazine biosynthesis protein1e-1273.6
NC_009925:4044691:406802240680224068858837Acaryochloris marina MBIC11017, complete genomephenazine biosynthesis PhzF family protein1e-1273.6
NC_009380:1177316:118172011817201182556837Salinispora tropica CNB-440 chromosome, complete genomePhzF family phenazine biosynthesis protein3e-1272.8
NC_012214:124337:141039141039141890852Erwinia pyrifoliae Ep1/96, complete genomeantibiotic biosynthesis protein3e-1272.8
NC_014210:965130:969925969925970716792Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,phenazine biosynthesis protein PhzF family5e-1272
NC_009778:1717458:174960417496041750401798Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-1271.6
NC_014307:3179100:318417031841703185027858Ralstonia solanacearum CFBP2957 chromosome, complete genomeisomerase, phenazine biosynthesis phzc/phzf domain6e-1271.6
NC_013446:2062862:207741020774102078273864Comamonas testosteroni CNB-2, complete genomephenazine biosynthesis protein PhzF family1e-1170.5
CP002207:1:338903389034666777Bacillus atrophaeus 1942, complete genomePhzF family phenazine biosynthesis protein2e-1170.1
NC_014639:1:338903389034666777Bacillus atrophaeus 1942 chromosome, complete genomePhzF family phenazine biosynthesis protein2e-1170.1
NC_007511:1780500:178082417808241781729906Burkholderia sp. 383 chromosome 2, complete sequencePhenazine biosynthesis PhzC/PhzF protein2e-1169.7
NC_003295:271736:284265284265285122858Ralstonia solanacearum GMI1000, complete genomehypothetical protein3e-1169.3
NC_018664:3073022:308618430861843087071888Clostridium acidurici 9a chromosome, complete genomePhzF family phenazine biosynthesis protein8e-1167.8
NC_014394:1626699:164354316435431644322780Gallionella capsiferriformans ES-2 chromosome, complete genomephenazine biosynthesis protein PhzF family1e-1067.4
NC_011740:1831845:184737418473741848201828Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative epimerase, PhzC/PhzF homolog2e-0963.2
NC_016631:3245501:324794832479483248838891Granulicella mallensis MP5ACTX8 chromosome, complete genomephenazine biosynthesis protein PhzF family6e-0961.6
NC_014618:2423661:242453824245382425326789Enterobacter cloacae SCF1 chromosome, complete genomephenazine biosynthesis protein PhzF family protein2e-0653.5