Query: NC_007604:1586243 Synechococcus elongatus PCC 7942, complete genome
Start: 1586243, End: 1629449, Length: 43207
Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria
General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_006576:2683467 | 2683467 | 2709499 | 26033 | Synechococcus elongatus PCC 6301, complete genome | 0 | 51450 | BLASTN svg | BLASTP svg |
NC_006576:12230* | 12230 | 39594 | 27365 | Synechococcus elongatus PCC 6301, complete genome | 0 | 35940 | BLASTN svg | BLASTP svg |
NC_019757:4953806 | 4953806 | 4977084 | 23279 | Cylindrospermum stagnale PCC 7417, complete genome | 3e-35 | 159 | BLASTN svg | BLASTP svg |
NC_013161:1023716 | 1023716 | 1047034 | 23319 | Cyanothece sp. PCC 8802, complete genome | 2e-27 | 133 | BLASTN svg | BLASTP svg |
NC_011726:1023690 | 1023690 | 1047008 | 23319 | Cyanothece sp. PCC 8801, complete genome | 4e-25 | 125 | BLASTN svg | BLASTP svg |
NC_005125:2811986 | 2811986 | 2855352 | 43367 | Gloeobacter violaceus PCC 7421, complete genome | 1e-18 | 103 | BLASTN svg | BLASTP svg |
NC_014323:4355266 | 4355266 | 4378574 | 23309 | Herbaspirillum seropedicae SmR1 chromosome, complete genome | 2e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_011296:801612* | 801612 | 824804 | 23193 | Thermodesulfovibrio yellowstonii DSM 11347, complete genome | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_013440:8717500 | 8717500 | 8744031 | 26532 | Haliangium ochraceum DSM 14365, complete genome | 9e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014414:2491811 | 2491811 | 2511279 | 19469 | Parvularcula bermudensis HTCC2503 chromosome, complete genome | 1e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_006576:414696 | 414696 | 441510 | 26815 | Synechococcus elongatus PCC 6301, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_002939:2337402* | 2337402 | 2396717 | 59316 | Geobacter sulfurreducens PCA, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_010814:2482848 | 2482848 | 2526717 | 43870 | Geobacter lovleyi SZ, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011146:896000* | 896000 | 918403 | 22404 | Geobacter bemidjiensis Bem, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014973:4174668* | 4174668 | 4210211 | 35544 | Geobacter sp. M18 chromosome, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_012793:2122036* | 2122036 | 2146755 | 24720 | Geobacillus sp. WCH70, complete genome | 8e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010546:3071377 | 3071377 | 3095631 | 24255 | Cyanothece sp. ATCC 51142 chromosome circular, complete sequence | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_007604:1183497 | 1183497 | 1206109 | 22613 | Synechococcus elongatus PCC 7942, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_007516:774489* | 774489 | 816164 | 41676 | Synechococcus sp. CC9605, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_020209:3797830* | 3797830 | 3820203 | 22374 | Pseudomonas poae RE*1-1-14, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_014483:195321 | 195321 | 216430 | 21110 | Paenibacillus polymyxa E681 chromosome, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013440:5509790* | 5509790 | 5536371 | 26582 | Haliangium ochraceum DSM 14365, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |