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Query: NC_007604:1586243 Synechococcus elongatus PCC 7942, complete genome

Start: 1586243, End: 1629449, Length: 43207

Host Lineage: Synechococcus elongatus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: This strain is a freshwater organism and is extensively studied due to its circadian clock which controls the expression of upwards of 800 genes during a 24 hour period. These unicellular cyanobacteria are also known as blue green algae and along with Prochlorococcus are responsible for a large part of the carbon fixation that occurs in marine environments. Synechococcus have a broader distribution in the ocean and are less abundant in oligotrophic (low nutrient) regions. These organism utilize photosystem I and II to capture light energy. They are highly adapted to marine environments and some strains have evolved unique motility systems in order to propel themselves towards areas that contain nitrogenous compounds. An obligate photoautotroph, it has been studied extensively by an international research community with respect to acquisition of organic carbon, transport and regulation of nitrogen compounds, adaptation to nutrient stresses, and reponse to light intensity.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006576:26834672683467270949926033Synechococcus elongatus PCC 6301, complete genome051450BLASTN svgBLASTP svg
NC_006576:12230*122303959427365Synechococcus elongatus PCC 6301, complete genome035940BLASTN svgBLASTP svg
NC_019757:49538064953806497708423279Cylindrospermum stagnale PCC 7417, complete genome3e-35159BLASTN svgBLASTP svg
NC_013161:10237161023716104703423319Cyanothece sp. PCC 8802, complete genome2e-27133BLASTN svgBLASTP svg
NC_011726:10236901023690104700823319Cyanothece sp. PCC 8801, complete genome4e-25125BLASTN svgBLASTP svg
NC_005125:28119862811986285535243367Gloeobacter violaceus PCC 7421, complete genome1e-18103BLASTN svgBLASTP svg
NC_014323:43552664355266437857423309Herbaspirillum seropedicae SmR1 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_011296:801612*80161282480423193Thermodesulfovibrio yellowstonii DSM 11347, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_013440:87175008717500874403126532Haliangium ochraceum DSM 14365, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_014414:24918112491811251127919469Parvularcula bermudensis HTCC2503 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_006576:41469641469644151026815Synechococcus elongatus PCC 6301, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_002939:2337402*2337402239671759316Geobacter sulfurreducens PCA, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010814:24828482482848252671743870Geobacter lovleyi SZ, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011146:896000*89600091840322404Geobacter bemidjiensis Bem, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014973:4174668*4174668421021135544Geobacter sp. M18 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012793:2122036*2122036214675524720Geobacillus sp. WCH70, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_010546:30713773071377309563124255Cyanothece sp. ATCC 51142 chromosome circular, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_007604:11834971183497120610922613Synechococcus elongatus PCC 7942, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_007516:774489*77448981616441676Synechococcus sp. CC9605, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_020209:3797830*3797830382020322374Pseudomonas poae RE*1-1-14, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_014483:19532119532121643021110Paenibacillus polymyxa E681 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_013440:5509790*5509790553637126582Haliangium ochraceum DSM 14365, complete genome5e-0661.9BLASTN svgBLASTP svg