Pre_GI: BLASTN Hits

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Query: NC_007492:5214709 Pseudomonas fluorescens PfO-1, complete genome

Start: 5214709, End: 5241684, Length: 26976

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015379:1151143*1151143118279531653Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,06958BLASTN svgBLASTP svg
NC_012660:5571500*5571500559959928100Pseudomonas fluorescens SBW25 chromosome, complete genome05925BLASTN svgBLASTP svg
NC_004129:5723787*5723787575817934393Pseudomonas fluorescens Pf-5, complete genome02849BLASTN svgBLASTP svg
NC_010501:4787963*4787963480728619324Pseudomonas putida W619, complete genome01913BLASTN svgBLASTP svg
NC_004129:57814135781413580497523563Pseudomonas fluorescens Pf-5, complete genome2e-63252BLASTN svgBLASTP svg
NC_015733:1943385*1943385196159918215Pseudomonas putida S16 chromosome, complete genome2e-56228BLASTN svgBLASTP svg
NC_010501:18688881868888190527536388Pseudomonas putida W619, complete genome2e-47198BLASTN svgBLASTP svg
NC_007005:2686551*2686551274062754077Pseudomonas syringae pv. syringae B728a, complete genome3e-46194BLASTN svgBLASTP svg
NC_008027:3953951*3953951397851024560Pseudomonas entomophila L48, complete genome2e-44188BLASTN svgBLASTP svg
NC_013889:1382705*1382705140993927235Thioalkalivibrio sp. K90mix chromosome, complete genome7e-32147BLASTN svgBLASTP svg
NC_008789:1837493*1837493185616418672Halorhodospira halophila SL1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007333:430000*43000045449524496Thermobifida fusca YX, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013501:1691532*1691532171518723656Rhodothermus marinus DSM 4252, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_007508:3034718*3034718305615521438Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010334:72240872240874265120244Shewanella halifaxensis HAW-EB4, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010002:40737244073724409509921376Delftia acidovorans SPH-1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015563:4911188*4911188493357422387Delftia sp. Cs1-4 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010002:2518599*2518599254275024152Delftia acidovorans SPH-1, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008686:13838911383891143076746877Paracoccus denitrificans PD1222 chromosome 1, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_004578:11537381153738117268818951Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010571:4483500*4483500451059927100Opitutus terrae PB90-1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015740:36783423678342371659938258Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete8e-0763.9BLASTN svgBLASTP svg
NC_013222:299683*29968338036580683Robiginitalea biformata HTCC2501, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_011059:112057920579Prosthecochloris aestuarii DSM 271, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010334:83550083550085519319694Shewanella halifaxensis HAW-EB4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007517:2632233*2632233265338221150Geobacter metallireducens GS-15, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006677:215466*21546625730741842Gluconobacter oxydans 621H, complete genome3e-0661.9BLASTN svgBLASTP svg